Subtropical Fruit Crops Research & Education
University of California
Subtropical Fruit Crops Research & Education

Shoot and Twig Dieback of Citrus

Recently, an outbreak of shoot and twig dieback disease of citrus has been occurring in the main citrus growing regions of the Central Valley of California (Fig 1). The causal agents of this disease were identified as species of Colletotrichum, which are well-known pathogens of citrus and other crops causing anthracnose diseases. At this time, it is unclear how wide-spread the disease is in California citrus orchards, but surveys are being conducted to evaluate the spread of this disease in orchards.

The disease was first noticed in 2012 by several growers and nurserymen in various orchards in the Central Valley. Symptoms included leaf chlorosis, crown thinning, gumming on twigs and shoot dieback, and in severe cases, branch dieback of trees (Fig.2). The most characteristic symptoms of this disease are the gum pockets which appear on young shoots either alone or in clusters and the dieback of twigs and shoots (Fig.3). These symptoms were primarily reported from clementine, mandarin, and navel orange varieties. In order to determine the main cause of this disease, field surveys were conducted in several orchards throughout the Central Valley. Isolations from symptomatic plant samples frequently yielded Colletotrichum species.

            Field observations indicate that symptoms initially appear during the early summer months and continue to express until the early fall. Trees showing dieback and gumming symptoms characteristic of this disease are usually sporadic within an orchard and generally only a few twigs or shoots are affected within a tree. Morphological and molecular phylogenetic studies allowed the identification of two distinct species of Colletotrichum (Colletotrichum karstii and Colletotrichum gloeosporioides) associated with twig and shoot dieback. Interestingly, these Colletotrichum species were also isolated from cankers in larger branches. Although C. gloeosporioides is known to cause anthracnose on citrus, a post-harvest disease causing fruit decay, it has not been reported to cause shoot dieback of citrus. C. karstii however has not been reported previously from citrus in California and our laboratory is currently conducting field and green house studies to determine the pathogenicity of this species in citrus.

            At present, it is unclear how widespread this disease is in California orchards or how many citrus varieties are susceptible to this disease. Pest control advisors are advised to remain alert and monitor citrus trees for the presence of the disease in the Central Valley (particularly clementine, mandarin, and navel varieties) during the early summer months. Continuing research lead by Dr. Akif Eskalen (UC Riverside) in collaboration with Dr. Florent Trouillas (Kearney Agricultural Research and Extension Center), Dr. Greg Douhan (UCCE Farm Advisor Tulare County), and Craig Kallsen (UCCE Farm Advisor in Kern County) is focused on further understanding the biology of the fungal pathogens as well as factors influencing disease expression in order to develop management strategies against this emerging disease.

Shoot dieback symptoms on Clementine

Branch dieback symptoms on Clementine

Gumming symptoms on Clementine

(photos: A. Eskalen)


Posted on Wednesday, April 19, 2017 at 5:19 AM
  • Author: Joey Mayorquin, Mohamed Nouri, Florent Trouillas, Greg Douhan and Akif Eskalen
Tags: anthracnose (2), anthracnosis (1), blight (6), citrus (216), disease (46), drought (38), fungus (6)

No Comments Posted.

Login to leave a comment.
Webmaster Email: