- Author: Joey Mayorquin, Mohamed Nouri, Florent Trouillas, Greg Douhan and Akif Eskalen
Recently, an outbreak of shoot and twig dieback disease of citrus has been occurring in the main citrus growing regions of the Central Valley of California (Fig 1). The causal agents of this disease were identified as species of Colletotrichum, which are well-known pathogens of citrus and other crops causing anthracnose diseases. At this time, it is unclear how wide-spread the disease is in California citrus orchards, but surveys are being conducted to evaluate the spread of this disease in orchards.
The disease was first noticed in 2012 by several growers and nurserymen in various orchards in the Central Valley. Symptoms included leaf chlorosis, crown thinning, gumming on twigs and shoot dieback, and in severe cases, branch dieback of trees (Fig.2). The most characteristic symptoms of this disease are the gum pockets which appear on young shoots either alone or in clusters and the dieback of twigs and shoots (Fig.3). These symptoms were primarily reported from clementine, mandarin, and navel orange varieties. In order to determine the main cause of this disease, field surveys were conducted in several orchards throughout the Central Valley. Isolations from symptomatic plant samples frequently yielded Colletotrichum species.
Field observations indicate that symptoms initially appear during the early summer months and continue to express until the early fall. Trees showing dieback and gumming symptoms characteristic of this disease are usually sporadic within an orchard and generally only a few twigs or shoots are affected within a tree. Morphological and molecular phylogenetic studies allowed the identification of two distinct species of Colletotrichum (Colletotrichum karstii and Colletotrichum gloeosporioides) associated with twig and shoot dieback. Interestingly, these Colletotrichum species were also isolated from cankers in larger branches. Although C. gloeosporioides is known to cause anthracnose on citrus, a post-harvest disease causing fruit decay, it has not been reported to cause shoot dieback of citrus. C. karstii however has not been reported previously from citrus in California and our laboratory is currently conducting field and green house studies to determine the pathogenicity of this species in citrus.
At present, it is unclear how widespread this disease is in California orchards or how many citrus varieties are susceptible to this disease. Pest control advisors are advised to remain alert and monitor citrus trees for the presence of the disease in the Central Valley (particularly clementine, mandarin, and navel varieties) during the early summer months. Continuing research lead by Dr. Akif Eskalen (UC Riverside) in collaboration with Dr. Florent Trouillas (Kearney Agricultural Research and Extension Center), Dr. Greg Douhan (UCCE Farm Advisor Tulare County), and Craig Kallsen (UCCE Farm Advisor in Kern County) is focused on further understanding the biology of the fungal pathogens as well as factors influencing disease expression in order to develop management strategies against this emerging disease.
Shoot dieback symptoms on Clementine
Branch dieback symptoms on Clementine
Gumming symptoms on Clementine
(photos: A. Eskalen)
- Author: Ben Faber
Drought Induced Problems in Our Orchards
Abiotic disorders are plant problems that are non-infective. They are not caused by an organism, but through their damage, they may bring on damage caused by organisms. Think of a tree hit by lightning or a tractor. The damage breaches the protective bark which allows fungi to start working on the damaged area, eventually leading to a decayed trunk. It was the mechanical damage, though that set the process in motion.
Too much or too little water can also predispose a plant to disease. Think of Phytophthora root rot or even asphyxiation that can come from waterlogging or too frequent irrigations.
Salinity Effects from Lack of Water
Lack of water and especially sufficient rainfall can lead to salinity and specific salts like boron, sodium and chloride accumulating in the root zone. This happens from a lack of leaching that removes native soil salts from the root zone or the salts from the previous salt-laden irrigation from the root zone. These salts cause their own kind of damage, but they can also predispose a tree to disorders, disease and invertebrate (insect and mite) damage.
Lack of water and salt accumulation act in a similar fashion. Soil salt acts in competition with roots for water. The more soil salt, the harder a tree needs to pull on water to get what it needs. The first symptom of lack of water or salt accumulation may be an initial dropping of the leaves. If this condition is more persistent, though we start to see what is called “tip burn” or “salt damage”. Southern California is tremendously dependent on rainfall to clean up irrigation salts, and when rain is lacking, irrigation must be relied on to do the leaching
As the lack of leaching advances (lack of rainfall and sufficient irrigation leaching) the canopy thins from leaf drop, exposing fruit to sunburn and fruit shriveling.
Leaf drop and fruit shriveling in avocado.
In the case of sensitive citrus varieties like mandarins, water stress can lead to a pithy core with darker colored seeds, almost as if the fruit had matured too long on the tree.
Total salinity plays an important factor in plant disorder, but also the specific salts. These salts accumulate in the older leaves, and cause characteristic symptoms that are characteristic in most trees. Boron will appear on older leaves, causing an initial terminal yellowing in the leaf that gradually turns to a tip burn.
Often times it is hard to distinguish between chloride, sodium and total salinity damage. It is somewhat a moot point, since the method to control all of them is the same – increased leaching. There is no amendment or fertilizer that can be applied that will correct this problem. The damage symptoms do not go away until the leaf drops and a new one replaces it. By that time hopefully rain and/or a more efficient irrigation program has been put in place.
The Impact of Drought on Nutrient Deficiencies
Salinity and drought stress can also lead to mineral deficiencies. This is either due to the lack of water movement carrying nutrients or to direct completion for nutrients. A common deficiency for drought stressed plants is nitrogen deficiency from lack of water entraining that nutrient into the plant.
This usually starts out in the older tissue and gradually spreads to the younger tissue in more advanced cases.
The salts in the root zone can also lead to competition for uptake of other nutrients like calcium and potassium. Apples and tomatoes are famous for blossom end rot when calcium uptake is low, but we have also seen it in citrus. Low calcium in avocado, and many other fruits, leads to lower shelf life. Sodium and boron accumulation in the root zone can lead to induced calcium deficiencies and increased sodium can also further lead to potassium deficiencies. Leaching can help remove these competitive elements.
Drought Effect on Tree Disease
Drought and salt stress can also lead to disease, but in many cases once the problem has been dealt with the disease symptoms slowly disappear. They are secondary pathogens and unless it is a young tree (under three years of age) or one blighted with a more aggressive disease, the disease condition is not fatal. Often times, in the best of years, on hilly ground these diseases might be seen where water pressure is lowest or there are broken or clogged emitters. The symptoms are many – leaf blights, cankers, dieback, gummosis – but they are all caused by decomposing fungi that are found in the decaying material found in orchards, especially in the naturally occurring avocado mulch or artificially mulched orchards. Many of these fungi are related Botryosphaerias, but we once lumped then all under the fungus Dothiorella. These decay fungi will go to all manner of plant species, from citrus to roses to Brazilian pepper.
Another secondary pathogen that clears up as soon as the stress is relieved is bacterial canker in avocado. These ugly cankers form white crusted circles that ooze sap, but when the tree is healthy again, the cankers dry up with a little bark flap where the canker had been.
Drought Effect on Pests
Water/salt stress also makes trees more susceptible to insect and mite attack. Mites are often predated by predacious mites, and when there are dusty situations, they can't do their jobs efficiently and mites can get out of hand. Mite damage on leaves is often noted in well irrigated orchards along dusty picking rows
Many borers are attracted to water stressed trees and it is possible that the Polyphagous and Kuroshio Shot Hole Borers are more attracted to those trees.
And then we have conditions like Valencia rind stain that also appears in other citrus varieties. We know it will show up in water stressed trees, but we aren't sure what the mechanism that causes this rind breakdown just at color break. Could it be from thrips attracted to the stressed tree or a nutrient imbalance, it's not clear?
Water and salt stress can have all manner of effects on tree growth. It should lead to smaller trees, smaller crops and smaller fruit. The only way to manage this condition is through irrigation management. Using all the tools available, such as CIMIS, soil probes, soil sensors, your eyes, etc. and good quality available water are the way to improve management of the orchard to avoid these problems.
Scroll down for Images
Tip Burn, notice sun burn bottom right hand fruit
Endoxerosis with dried out core
Boron toxicity
Nitrogen deficiency
Blossom end rot
Potassium deficiency
Bot gumming in lemon
Black Streak in Avocado
Bacterial Canker
Citrus red mite
Polyphagous Shot Hole Borer damage on avocado
Valencia Rind Stain
- Author: Ben Faber
I recently went out to an avocado orchard on sandy soil that had had sudden leaf drop after a Santa Ana condition. The problem is that the orchard had had an ongoing leaf blight problem that had been accentuated by two years of drought and with the Santa Ana more pressure had been put on the trees. This is a condition that has become more and more pronounced over the year and with little rainfall is going to be something to watch out for this coming irrigation season.
Stem and leaf blights are symptoms that appear for various reasons – high rainfall or humidity, spray burn, chewing insect infestation. Here in California we can add other causes, such as drought and salinity burn. These conditions can cause wounding of leaf and stems allowing entry of fungal spores that can cause leaf and stem dieback. This condition is most common near the coast where weather conditions can change from mild and low temperatures to extremely high temperature with winds, such as the Santa Anas or the Sundowners in Santa Barbara. Leaves suddenly dry out, causing cracking either at that time or when they are rehydrated with irrigation. This allows spore entry into the wounds and permits the pathogen to grow in the dead tissue. Symptoms appear 7 – 10 days after the stress. These are decay fungi that create these spores and they are the ones that cause decay of dead tissue on the ground. So their spores are everywhere.
The greater part of a tree is dead – the woody part of the branches and trunk. And it is dead tissue that these fungi are feeding on. Most trees will limit the growth of the fungus by sealing off the infection with gums of various sorts. In that case, the disease is limited and you may only see a leaf or small branch dying back. In mature trees it is possible to see a small branch here and there that has died back, but the bulk of the canopy is still green. It has been called “salt and pepper syndrome”, because of that speckled appearance. In the case of young trees with their smaller root systems and a lesser ability to seal of the disease process, a whole tree can die.
Since this is a severe water stress or salt stress induced problem, the most important management issue is to watch the weather forecasts predicting unusual hot, dry weather and make sure the trees are adequately irrigated going into the stressful period. Shallow rooted trees like avocados are more prone to dry out rapidly in these high water demand situations, but it can be occur in other trees (citrus, apple, peach) and shrubs if the weather conditions are severe enough. With poor leaching due to low rainfall, this can be more of a problem
The only solution to the symptoms is to cut out the diseased parts to prevent its further spread. Once the disease starts spreading, the fungus can produce copious amounts of spores, which in the case of avocado can cause cankers and rots on the fruit.
Some symptoms of leaf blight. Spots that progress into marginal necrosis can occur or just general necrosis.
- Author: Ben Faber
Stem and leaf blights are symptoms that appear for various reasons – high rainfall or humidity, spray burn, chewing insect infestation. Here in California we can add other causes, such as drought and salinity burn. These conditions can cause wounding of leaf and stems allowing entry of fungal spores that can cause leaf and stem dieback. This condition is most common near the coast where weather conditions can change from mild and low temperatures to extremely high temperature with winds, such as the Santa Anas or the Sundowners in Santa Barbara. Leaves suddenly dry out, causing cracking either at that time or when they are rehydrated with irrigation. This allows spore entry into the wounds and permits the pathogen to grow in the dead tissue. Symptoms appear 7 – 10 days after the stress. These are decay fungi that create these spores and they are the ones that cause decay of dead tissue on the ground. So their spores are everywhere.
The greater part of a tree is dead – the woody part of the branches and trunk. And it is dead tissue that these fungi are feeding on. Most trees will limit the growth of the fungus by sealing off the infection with gums of various sorts. In that case, the disease is limited and you may only see a leaf or small branch dying back. In mature trees it is possible to see a small branch here and there that has died back, but the bulk of the canopy is still green. It has been called “salt and pepper syndrome”, because of that speckled appearance. In the case of young trees with their smaller root systems and a lesser ability to seal of the disease process, a whole tree can die.
Since this is a severe water stress or salt stress induced problem, the most important management issue is to watch the weather forecasts predicting unusual hot, dry weather and make sure the trees are adequately irrigated going into the stressful period. Shallow rooted trees like avocados are more prone to dry out rapidly in these high water demand situations, but it can be occur in other trees (citrus, apple, peach) and shrubs if the weather conditions are severe enough. With poor leaching due to low rainfall, this can be more of a problem
The only solution to the symptoms is to cut out the diseased parts to prevent its further spread. Once the disease starts spreading, the fungus can produce copious amounts of spores, which in the case of avocado can cause cankers and rots on the fruit.
Figure. In the case of young trees, the whole tree may die from blight.
- Author: Ben Faber, University of California Cooperative Extension
In both avocado and citrus there can be a rapid collapse of tissue brought on by a host of related fungi. The pathogen was once lumped as Dothiorella, but lately University of California extension plant pathologist Akif Eskalen has been able to tweeze out more species which mainly belong to the Botryosphaeria genus. The collapse can be quite rapid, so fast that the leaves continue to hang on to the tree. This disease is more common in years of low rainfall, where inadequate water is being applied (especially when Santa Ana winds are blowing), and where salinity build up has occurred. In the last 2 months, I have been called out to diagnose this problem five times. In each case, they were trees that had been sidelined and neglected or the grower was trying to save money by saving water. Luckily for a mature tree, there can be recovery as long the tree is protected from sunburn that occurs with defoliation. White wash the exposed parts, and wait for recovery. When it is clear what part is recovering, cut into fresh wood to remove the dead parts. For a more detailed discussion of this blight, see our 2009 Topics in Subtropics.