Monday, June 1 at 5 p.m. is the deadline to suggest a species name for a new genus of trapdoor spiders that UC Davis professor Jason Bond discovered on a sandy beach at Moss Landing State Park, Monterey County.
Bond proposes to name the genus, Cryptocteniza, part of which means “hidden or secret.”
Bond, a noted spider authority and the Evert and Marion Schlinger Endowed Chair in Insect Systematics, UC Davis Department of Entomology and Nematology, is accepting suggestions until 5 p.m., June 1 at email@example.com.
Bond will announce several of the best names at the Bohart Museum of Entomology pending virtual open house on the Bohart's Facebook Live page. He will also field questions about spiders. The first Bohart Museum virtual house spotlighted director Lynn Kimsey talking about bees and wasps.
Bond is submitting a manuscript to a scientific journal on the new genus. He and manuscript co-author Joel Ledford, assistant professor of teaching, UC Davis Department of Plant Biology, will select the winner. Ledford, whose research interests include spider systematics and biology education, interviewed Bond May 18 for his Tree of Life-UC Davis YouTube channel. It is online at https://www.youtube.com/watch?v=NV_eTablJMk.
“We don't want a public vote on the spider name,” in deference to the British polar research vessel that garnered a top public vote of “Boaty McBoatface” a few years ago, quipped Bond.
He does not want it named Bond or anything to do with the coronavirus pandemic.
Trapdoor spiders are so named because they construct their burrows with a corklike or wafer trap door made of soil, vegetation and silk.
Bond discovered the female spider in 1997 on the sandy beach, and collected the male spider last fall. It is rare to find a genus in the field, the professor said. The usual place is in museum collections.
“I have only one male specimen,” Bond told Ledford. It will find a permanent home in the Bohart Museum.
“This genus meets the criteria of an endangered living fossil,” Bond said, “and is consequently of grave conservation concern.”
Bond believes the genus is found only in that area, but thinks it may be closely related to a genus found in New Mexico and Arizona.
Of the genus name, Cryptocteniza, Bond says that the adjective “hidden or secret” is prefixed to Cteniza, the Greek feminine noun “comb.” The latter refers to the comb-like rastellum (row of stiff spines on the chelicera) common in taxa and formerly assigned to the spider family Ctenizidae (e.g., Eucteniza). The prefix refers to both the diminutive form of the rastellum and the seemingly “hidden in plain sight” nature of the genus, he says.
(Please send name suggestions to firstname.lastname@example.org)
The UC Davis Department of Entomology and Nematology's seminar on Wednesday, Feb. 26 will feature six “Faculty Flash Talks.”
The seminar, set from 4:10 to 5 p.m. in 122 Briggs Hall, will include Joanna Chiu, Jason Bond, Geoffrey Attardo, Rachel Vannette, Julia Fine, and Arathi Seshadri.
Associate professor Joanna Chiu, vice chair of the department, will present “results from a project in which we study the mechanisms by which insects sense environmental changes (temperature and photoperiod) to regulate their seasonal physiology. Our lab has identified a protein that can track seasonal changes in temperature and photoperiod to promote winter physiology. Without this protein, insects don't know winter is coming!”
Her laboratory research interests include molecular genetics of animal behavior, Circadian rhythm biology, and posttranslational regulation of proteins.
Jason Bond, Schlinger Chair in Insect Systematics, is a global expert on spiders. His research interests include systematics, taxonomy, and evolution of terrestrial arthropods with an emphasis on arachnids and myriapods. "We employ molecular, morphological, and ecological approaches to study questions related to evolutionary diversification at multiple hierarchical levels (populations – higher taxa)," he says. (See recent grant.)
Geoffrey Attardo, a medical entomologist/geneticist, focuses his research on insect disease vectors, insect reproduction, vector/parasite interactions, reproductive physiology, male seminal secretions, symbiosis, lactation, nutrition, lipid metabolism, transcriptional regulation, comparative genomics, transcriptomics, proteomics and metabolomics. His research on tsetse flies was recently featured on KQED's Deep Look (see news story on Deep Look). (See news story on landmark research.)
Rachel Vannette, community ecologist and assistant professor who coordinates the department's seminars, says: "All plants are colonized by microorganisms that influence plant traits and interactions with other species, including insects that consume or pollinate plants. I am interested in the basic and applied aspects of microbial contributions to the interaction between plants and insects. I also use these systems to answer basic ecological questions, such as what mechanisms influence plant biodiversity and trait evolution." (See recent research)
Arathi Seshadri and Julia Fine, who recently joined the USDA-ARS lab on Bee Biology Road, UC Davis, aim to improve honey bee survival and beekeeping sustainability in California and nationwide. They collaborate with federal, university, non-governmental and industry partners. (See news story on opening of the facility.)
Seshadri, a pollination biologist with expertise in honey bee behavior and plant reproductive strategies, is working with beekeepers and farmer stakeholders to develop projects aimed at finding solutions to the ongoing pollination challenges. Also trained as an evolutionary biologist, she has applied principles of plant-pollinator mutualism, specifically the impact of phytochemicals in pollen and nectar on honey bee health and colony performance. Her contributions to pollinator conservation include enhancing the sustainability of all pollinators, including native bees on farms and urban areas. She also has expertise in agroecosystem-based approaches and citizen science programs to promote pollinator diversity and abundance.
Fine, an entomologist with expertise in insect toxicology, honey bee physiology, reproduction and development, focuses her research on identifying how stressors impact honey bee behavior, health and fecundity. She uses both established and novel laboratory techniques. Her previous projects involved investigating how agrochemical and viral stressors interact to affect the development and survival of honey bee brood and how nutritional stress affects honey bee queen fecundity. In engaging with beekeepers and growers, Fine is researching how realistic biotic and abiotic stressors affect honey bee reproduction, longevity and pollination services, and she is identifying techniques and strategies to overcome these effects.
The seminar is open to all interested persons. For more information, contact Vannette at email@example.com.
Jason Bond, professor and the Schlinger Chair in Insect Systematics, UC Davis Department of Entomology and Nematology, has received a 4-year, $1.4 million National Science Foundation grant to study trapdoor spiders in the California Floristic Province.
“The idea is to look at the genomic diversity of trapdoor spider populations across the California landscape and identify new species and hotspots of diversity,” said Bond, principal investigator of the collaborative award, shared with Marshal Hedin, professor of biology at San Diego State University (SDSU).
“From a research perspective, this is pretty exciting but it also includes a really nice educational component working with Fran Keller at Folsom Lake College (a UC Davis alumnus),” Bond said. “We have REU (Research Experiences for Undergraduates) funding for students who will be transferring to UC Davis.”
Also working on the grant is co-PI James Starrett, project scientist in the Bond lab.
Trapdoor spiders construct their burrows with a corklike or wafer trap door made of soil, vegetation and silk. They belong to a number of related families placed in the order Araneae, including Euctenizidae and Halonoproctidae.
The researchers also will be using “crowdsourced” data from iNaturalist, involving public sightings of spiders.
The California Floristic Province is a floristic province with a Mediterranean-type climate on the Pacific Coast. In addition to its remarkable spider diversity, this biodiversity hotspot is known for its giant sequoias and coastal redwoods.
“One of the first products from the project will be the description of a new trapdoor spider genus and species from Moss Landing State Beach,” Bond said. Plans call for the public to suggest candidate names for the new species, with the Bohart Museum of Entomology selecting the winner.
The abstract: “Using a combination of original fieldwork, newly developed analytical methods for genetically identifying species and their evolutionary and geographic relationships, this research project will focus on trapdoor spiders and their relatives as an exemplary group for biodiversity knowledge and conservation in the California Floristic Province (CA-FP). Long-term surveys will be conducted at multiple geographic locations that include most major CA-FP habitat types. At these sites, the presence of spider species and the numbers of individuals in each will be measured to provide a statistical baseline for future monitoring efforts. New large DNA datasets, based on analysis of thousands of genes, will be generated by analysis of the genomes of these species.”
“New methods will be applied to this data to identify species boundaries, and formal taxonomic descriptions will be made for all new species,” according to the abstract. “The new information about these new species and their genetic relationships will be used to assess patterns of biodiversity in this spider group across the complex geography of the CA-FP. Statistical comparisons of the geographic patterns of spider species distribution will be made to CA-FP plants and vertebrates, and these results will be used to determine whether biodiversity hotspots coincide with federal, state, and locally protected areas.”
“This project will train students and other researchers in several techniques of field biology research, producing and analyzing new data from genomes, using cutting edge methods. This research will encourage participation and train a select group of community college students from underrepresented groups who plan to transfer to Science, Technology, Engineering, and Math (STEM) programs in four-year colleges.”
Bond and colleagues recently published research in the journal Systematic Biology that recognizes eight new spider families—five elevations in rank and three brand new family level rank names, along with one new subfamily. This is in addition to other new families that Bond and Hedin proposed last year. Postdoctoral researcher Vera Opatova of the Bond lab (she recently left for a position in Prague), is the first author on the Systematic Biology paper, "Phylogenetic Systematics and Evolution of the Spider Infraorder Mygalomorphae Using Genomic Scale Data," and Bond is the senior author.
Hedin is the principal investigator of a continuing grant, “Collaborative Research: Phylogenomics, Spatial Phylogenetics and Conservation Prioritization in Trapdoor Spiders (and Kin) of the California Floristic Province,” with co-principal investigator and Jeet Sukemaran, SDSU assistant professor who specializes in computational evolutionary biology.
Rebecca Godwin won first in the poster competition for her research on trapdoor spiders and Lacie Newton won second for her oral presentation on species delimitation. Their major professor, Jason Bond, is the department's Evert and Marion Schlinger Endowed Chair in Insect Systematics.
Godwin titled her work, “Revision of New World Ummidia (Mygalomorphae, Halonoproctidae)”: Her abstract: “Ummidia is a historically taxonomically difficult group of spiders belonging to the infraorder Mygalomorphae, one of the three main lineages recognized within spiders. Mygalomorph life history and their incredibly cryptic appearance make them difficult to identify, as a result they are frequently overlooked by spider systematists. Ummidia Thorell 1875 is a wide-ranging genus of trapdoor spider found both in the Mediterranean region of the Old World and in the New World from the eastern United States south to Brazil. Taxonomic work on New World Ummidia is sparse outside of original descriptions, the most recent of which are over half a century old."
"I am revising the genus Ummidia in the Nearctic region. I have approached this taxonomic problem by examining approximately 700 specimens of Ummidia from various collections (American Museum of Natural History, Museum of Comparative Zoology, Florida State Collection of Arthropods, California Academy of Sciences, and Auburn University Museum of Natural History). Examination of museum material has seemingly confirmed the undescribed diversity of Ummidia; preliminary estimates of New World species ranging between 50 and 60, with particularly high amounts of diversity in the Florida and Virginia. This study, along with many others conducted utilizing museum collections, is indicative of the importance of natural history collections and their usefulness in discovering unknown biodiversity.”
"Previous research by Hendrixson and Bond (2005) described a new sympatric species Antrodiaetus microunicolor in the A. unicolor species complex using morphological criteria (i.e. size and setal character differences) and behavioral criteria (non-overlapping mating seasons). Subsequently, they used two molecular markers COI and 28S and discovered that A. unicolor is paraphyletic with respect to A. microunicolor. To further delineate this species complex, we implement the cohesion species concept and employ multiple lines of evidence for testing genetic exchangeability and ecological interchangeability. Our integrative approach includes extensively sampling homologous loci across the genome using a version of RADseq called 3RAD, assessing population structure across their geographic range, and evaluating ecological similarity by niche-based distribution modeling. Based on our analyses, we conclude that this species complex has two or three species in addition to A. microunicolor.”
Godwin holds two degrees from Auburn University: her bachelor's degree in zoology in 2004, and her master's degree in wetland biology in 2011. She began her doctoral studies at Auburn University in 2014, and transferred to UC Davis when Bond accepted the UC Davis position in 2018.
Godwin's research interests include taxonomy, systematics, and phylogreography of trapdoor spiders, as well as effective science communication and increasing general science literacy.
Newton received her bachelor of science degree from Millsaps College, Jackson, Miss., in 2016, and then joined the Auburn University doctoral program. Like Godwin, she transferred to UC Davis with her major professor in 2018. Newton served as an undergraduate teaching assistant at Millsaps College for “Introduction to Cell Biology” and “General Zoology,” and as a graduate teaching assistant in “Introduction to Biology” at Auburn University.
Newton now serves as a graduate teaching assistant at UC Davis for “Introduction to Biology: Biodiversity and the Tree of Life.” She won the 2019-2020 George H. Vansell Scholarship, UC Davis. Her research interests include systematics, species delimitation, and phylogeography of spiders; phylogenetics; comparative transcriptomics of troglophilic and troglobitic spiders; cave biology and conservation.
Both Godwin and Newton volunteer at the Bohart Museum of Entomology's programs on spiders and at the campuswide UC Davis Biodiversity Museum Day.
Bond joined the UC Davis faculty after a seven-year academic career at Auburn University, Ala. He served as professor of biology and chair of the Department of Biological Sciences from January 2016 to July 2018, and as curator of arachnids and myriapods (centipedes, millipedes, and related animals) at the Auburn University Museum of Natural History, from August 2011 to July 2018.
Female golden orbweavers--tropical spiders known for weaving golden-hued webs as wide as five feet in diameter--are sometimes 10 times larger and 100 times heavier than their male counterparts, says Jason Bond, professor and Schlinger Chair in Insect Systematics, UC Davis Department of Entomology and Nematology. And notoriously, the huge females cannibalize the tiny males.
“Sexual size dimorphism (SSD) often seems to be correlated with extreme morphological, behavioral and life history phenotypes in either sex,” says Bond, senior author of a newly published paper in the Journal of Systematic Biology, a peer-reviewed scientific journal published by Oxford University Press on behalf of the Society of Systematic Biologists.
Through phylogenomic (the intersection of the fields of evolution and genomics) and comparative analyses, Bond and his colleagues found that golden orbweavers “ignore biological rules.”
The global team of 11 scientists--from Slovenia, China, Taiwan, Czech Republic and the United States (UC Davis, Smithsonian Institution, University of Idaho, University of Florida and University of Vermont)--unraveled a complex evolution of sexual size and dimorphism and found that Nephilid female gigantism is a “phylogenetically ancient phenotype, over 100 million years old, though their magnitudes vary by lineage.”
The spiders belong to the genus Nephila and family Nephilidae; the members are known for constructing huge or exaggerated webs. The species thrive in warmer regions throughout the world, including Australia, Asia, Africa (including Madagascar) and the America. One species, N. clavipes, is found in southern United States, from Texas to North Carolina.
For the paper, “Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism,” the team tested two biological rules: Cope's rule and Rensch's rule. Cope's rule postulates that population lineages tend to increase in body size over evolutionary time. Rensch's rule is a biological rule on allometric patterns of male and female size. Neither rule applied to the golden orbweavers.
First, the scientists established the backbone phylogeny of Nephilidae, using 367 anchored hybrid enrichment markers, and then combined these data with classical markers for a reference species level phylogeny.
“Second, we used the phylogeny to test Cope and Rensch's rules, sex specific size optima, and the coevolution of web size, type, and features with female and male body size and their ratio, SSD,” they wrote in their abstract. “Male, but not female, size increases significantly over time, and refutes Cope's rule. Allometric analyses reject the converse, Rensch's rule. Male and female body sizes are uncorrelated. Female size evolution is random, but males evolve toward an optimum size (3.2–4.9 mm). Overall, female body size correlates positively with absolute web size. However, intermediate-sized females build the largest webs (of the hybrid type), giant female Nephila and Trichonephila build smaller webs (of the aerial type), and the smallest females build the smallest webs (of the arboricolous type).”
In conclusion, the scientists proposed a new clade, a group of organisms evolving from a common ancestor. They resurrected the family Nephilidae and proposed the new clade, Orbipurae, to contain Araneidae Clerck 1757, Phonognathidae Simon 1894, new rank, and Nephilidae.
The researchers proposed “taxonomic changes based on the criteria of clade age, monophyly and exclusivity, classification information content, and diagnosability. Spider families, as currently defined, tend to be between 37 million years old and 98 million years old, and Nephilidae is estimated at 133 million years old, thus deserving family status.”
“Nephilid female gigantism is a phylogenetically ancient phenotype (over 100 million years old), as is extreme sexual size dimorphism, though their magnitudes vary by lineage,” they wrote. “Despite the sometimes conflicting trends seen within Nephilidae, the clade stands as the most extreme example of female-biased SSD among terrestrial animals, as far as we know.”
The Jason Bond lab and the Chris Hamilton lab, Department of Entomology, Plant Pathology and Nematology at the University of Idaho, Moscow, provided the anchored hybrid enrichment data and phylogenomic analysis.
Co-authors of the paper, in addition to Bond and Hamilton, are
- Matjaž Kuntner of the National Institute of Biology, Ljubljana, Slovenia; the National Museum of Natural History, Smithsonian Institution, Washington D.C.; and Hubei University, China;
- Ren-Chung Cheng, Biological Institute ZRC SAZU, Ljubljana, Slovenia, and National Chung Hsing University, Taiwan;
- Matjaž Gregorič, Nik Lupše and Tjaša Lokovšek, all with the Biological Institute ZRC SAZU, Ljubljana,Slovenia (Lupse is also affiliated with the Charles University, Prague, Czech Republic);
- Emily Moriatry Lemmon and Alan Lemmon, Florida State University, Tallahassee;
- Ingi Agnarsson of the National Museum of Natural History, Smithsonian Institution; and University of Vermont, Burlington; and
- Jonathan Coddington, National Museum of Natural History, Smithsonian Institution.
The research drew funds from Slovenian Research Agency grants, from the U.S. State Department through a Fulbright visiting scholar; ZRZ Director's Fund, National Science Foundation, Doctoral Dissertation Improvement Grant and funds from Auburn University, Alabama. Bond joined the UC Davis faculty in July of 2018 from Auburn University after a seven-year academic career there, where he served as professor of biology and chaired the Department of Biological Sciences. He also curated the arachnids and myriapods (centipedes, millipedes, and related animals) at the Auburn University Museum of Natural History.