- Author: Kathy Keatley Garvey
A year-long project on "Current Techniques in Morphology" was posted online today (Nov. 12).
Doctoral candidate Brendon Boudinot of the Phil Ward lab, UC Davis Department of Entomology and Nematology, edited the special collection of articles for the Entomological Society of America journal, Insect Systematics and Diversity (ISD). The work is publicized on EurekAlert! and the entire project can be accessed free online.
Boudinot co-led the development of the collection with István Mikó, collections manager at the University of New Hampshire Department of Biological Sciences.
For the year-long project. Boudinot and Mikó gathered articles illustrating cutting-edge research techniques in insect morphology and phylogenetics, including videos, interactive 3D images, and augmented reality.
"The increasing availability of advanced technologies, such as micro-computed tomography and confocal laser scanning microscopy, are allowing researchers to generate models of morphology in three and four dimensions based on physical data,” Boudinot wrote in the foreword. “These models not only allow for detailed and quantitative study of anatomical systems and their biomechanical properties, but they also allow end-users to experience the richness of morphology in virtual reality, which is incredible."
Boudinot marvels at the 3D models “which open new pathways of research and which you can manipulate on your computer, and another which can project your model in virtual reality on your phone or tablet.”
Boudinot also wrote an editorial on the future of morphology titled Toward Phylomics in Entomology: Current Systematic and Evolutionary Morphology.
Articles in the collection include:
- A Systematist's Guide to Estimating Bayesian Phylogenies From Morphological Data
- PARAMO: A Pipeline for Reconstructing Ancestral Anatomies Using Ontologies and Stochastic Mapping
- From Spinning Silk to Spreading Saliva: Mouthpart Remodeling in Manduca sexta (Lepidoptera: Sphingidae)
- Jumping and Grasping: Universal Locking Mechanisms in Insect Legs
- Revision of the Highly Specialized Ant Genus Discothyrea (Hymenoptera: Formicidae) in the Afrotropics with X-Ray Microtomography and 3D Cybertaxonomy
- Ready Species One: Exploring the Use of Augmented Reality to Enhance Systematic Biology with a Revision of Fijian Strumigenys (Hymenoptera: Formicidae)
“Morphology, encompassing the study of phenotypic form and function, is one of the ancient branches of human knowledge and is foundational for organismal classification,” Boudinot wrote in his editorial. “Two decades into the current century, the specialized biological knowledge of the history and pattern of evolution has been revolutionized by genome-scale sequencing technologies, and cryptic variation within and among species is quantifiable even with a few genetic markers. The application of statistical phylogenetic models of nucleotide and amino acid substitution to sequence data has enabled revised interpretations of morphological identities—be they population-level generalizations, such as species diagnoses, or the definition and homology of specific anatomical entities—and evolutionary transformation across the tree of life (e.g., insect genitalia, ancestral morphology of Polyneoptera). These models are also being adapted for phylogenetic analysis of morphological data, allowing explicit incorporation of fossil terminals and their stratigraphic information.”
Boudinot coined the word, “Phylomics,” which he said “can be defined as the inference of organismal evolution at the molecular and morphological scale, through the use of genomic and phenomic data (the ‘phenome' being a physical model of the phenotype of an organism, such as seen in the ISD special collection). The idea ultimately is to model the morphology of organisms across the phylogeny, through time, literally depicting ancestors and seeing the transformation from ancestor to descendant across the tree of life.”
UC Davis undergraduate student Ziv Lieberman of the Phil Ward lab (he's a senior majoring in evolution and ecology), and Francisco Hita-Garcia of Okinawa (of the Biodiversity and Biocomplexity Unit and Institute of Science and Technology Graduate University), served as the lead authors of “Revision of the Highly Specialized Ant Genus Discothyrea (Hymenoptera: Formicidae) in the Afrotropics with X-Ray Microtomography and 3D Cybertaxonomy.”
Lieberman and Hita-Garcia and three other co-authors described 15 new species in the genus, which is poorly represented in museum collections. Due to its “cryptic lifestyle, Discothyrea are poorly represented in museum collections and their taxonomy has been severely neglected,” they wrote. “We perform the first comprehensive revision of Discothyrea in the Afrotropical region through a combination of traditional and three-dimensional (3D) cybertaxonomy based on microtomography (micro-CT). Species diagnostics and morphological character evaluations are based on examinations of all physical specimens and virtual analyses of 3D surface models generated from micro-CT data.” These models can be seen for free in their article and online at https://sketchfab.com/arilab/collections/discothyrea.
Additionally, they applied “virtual dissections for detailed examinations of cephalic structures to establish terminology based on homology for the first time in Discothyrea. The complete datasets comprising micro-CT data, 3D surface models and videos, still images of volume renderings, and colored stacked images are available online as cybertype datasets (Hita Garcia et al. 2019, http://doi.org/10.5061/dryad.3qm4183).”
The journal, Insect Systematics and Diversity, launched by ESA in 2017, publishes research on systematics, evolution, and biodiversity of insects and related arthropods, including comparative and developmental morphology, conservation, behavior, taxonomy, molecular phylogenetics, paleobiology, natural history, and phylogeography.
The journal set out to host articles that utilize novel technologies or data types or describe emerging methods of research, ESA spokesperson Lisa Junker said. The new special collection on current techniques in morphology, she said, highlights how Insect Systematics and Diversity has become a premier outlet for integrative research combining multiple subdisciplines within the field.
- Author: Kathy Keatley Garvey
Plants communicate. They do.
Ecologist Richard Karban, a professor in the UC Davis Department of Entomology, points out that one of the simplest forms of communication involves shade.
When a plant is shaded, it grows away from the plant or other object that's shading it.
Today he published research in the Proceedings of the Royal Society B: Biological Sciences that is truly amazing readers. It involves kinship, communication and defenses.
Basically, if you’re a sagebrush and your nearby kin is being eaten by a grasshopper, deer, jackrabbit, caterpillar or other predator, it’s good to be closely related. Through volatile (chemical) cues, your kin will inform you of the danger so you can adjust your defenses.
If you’re not closely related, communication won’t be as effective.
Kin have distinct advantages when it comes to plant communication, just as “the ability of many animals to recognize kin has allowed them to evolve diverse cooperative behaviors," Karban says. For example, fire ants can recognize kin. “Ants will destroy queens that are not relatives but protect those who are."
That ability is less well studied for plants--until now.
“When sagebrush plants are damaged by their herbivores, they emit volatiles that cause their neighbors to adjust their defenses,” Karban said. “These adjustments reduce rates of damage and increase growth and survival of the neighbors.”
“When sagebrush plants are damaged by their herbivores, they emit volatiles that cause their neighbors to adjust their defenses,” Karban said. “These adjustments reduce rates of damage and increase growth and survival of the neighbors.”
“Why would plants emit these volatiles which become public information?” he asked. “Our results indicate that the volatile cues are not completely public, that related individuals responded more effectively to the volatiles than did strangers. This bias makes it less likely that emitters will aid strangers and more likely that receivers will respond to relatives.”
The research, “Kin Recognition Affects Plant Communication and Defense,” is co-authored by two scientists from Japan and two from UC Davis: Kaori Shiojiri of the Hakubi Center for Advanced Research, Kyoto University, and Satomi Ishizaki of the Graduate School of Science and Technology, Niigata University; and William Wetzel of the UC Davis Center for Population Biology, and Richard Evans of the UC Davis Department of Plant Science.
To simulate predator damage, the researchers “wounded” the plants by clipping them and then studied the responses to the volatile cues. They found that the plants that received cues from experimentally clipped close relatives experienced less leaf damage over the growing season that those that received cues from clipped neighbors that were more distantly related.
“More effective defense adds to a growing list of favorable consequences of kin recognition for plants,” they wrote.
The researchers performed their field work on sagebrush (Artemisia tridentata) at Taylor Meadow, UC Sagehen Creek Field Station, near Truckee. They conducted four field experiments over three years “that compared the proportion of leaves that were damaged by herbivores over the growing season when plants were provided with volatile cues clipped from a close relative versus cues from a distant relative,” the scientists wrote.
For closely related kin, they snipped stem cuttings (clones), potted them, and then returned the pots to the field. They determined relatedness “by using microsatellites that varied among individual sagebrush clones.”
The result: “Plants responded more effectively to volatile cues from close relatives than from distant relatives in all four experiments and communication reduced levels of leaf damage experienced over the three growing seasons,” they wrote. “This result was unlikely to be caused by volatiles repelling or poisoning insect herbivores.”
Karban, who has studied plant communication among the sagebrush at the site since 1999, likened the plant communication to neighbors “eavesdropping.” They “hear” the volatile cues of their neighbors as predators damage them.
Eavesdropping. Kinship. Plant communication. Plant defenses.
Fascinating stuff.
Who knew?