Posts Tagged: food safety
Natural habitat maximizes the benefits of birds for farmers, food safety and conservation
A supportive environment can bring out the best in an individual — even for a bird.
After an E.coli outbreak in 2006 devastated the spinach industry, farmers were pressured to remove natural habitat to keep wildlife — and the foodborne pathogens they can sometimes carry — from visiting crops. A study published today from the University of California, Davis, shows that farms with surrounding natural habitat experience the most benefits from birds, including less crop damage and lower food-safety risks.
The study, published in the Journal of Applied Ecology, was conducted at 21 strawberry fields along California's Central Coast. It found that birds were more likely to carry pathogens and eat berries without surrounding natural habitat.
The authors said a better understanding of the interplay of farming practices, the landscape, and the roles birds play in ecosystems can help growers make the most out of wild birds near their fields.
“Bird communities respond to changes in the landscape,” said lead author Elissa Olimpi, a postdoctoral scholar in the UC Davis Department of Wildlife, Fish and Conservation Biology at the time of the study. “As birds shift in response to management, so do the costs and benefits they provide.”
The single most important driver
The study looked at how different farming practices influenced the costs and benefits that wild birds provided on the strawberry farms. The scientists combined nearly 300 bird surveys and the molecular analyses of more than 1,000 fecal samples from 55 bird species to determine which birds ate pests, beneficial insects and crops, and carried foodborne pathogens.
They also ranked birds to see which were more likely to bring benefits or costs to farmlands. Barn swallows, for instance, got a “gold star” in the study, Olimpi said. Their mud nests are commonly seen clinging to the underside of barn eaves, from which they fly out to swoop over fields, foraging on insects.
But rather than resulting in a list of “good” and “bad” birds, the study found that most bird species brought both costs and benefits to farms, depending on how the landscape was managed.
The presence of natural habitat was the single most important driver differentiating a farm where wild birds brought more benefits than harm.
“Nature is messy, and birds are complex,” Olimpi said. “The best we can do is understand how to take advantage of the benefits while reducing the harms. Growers will tell you it's impossible to keep birds off your farm — you can't do that and don't want to from a conservation perspective. So how can we take advantage of the services birds provide?”
Win-wins for birds and farms
The study is one of several publications from UC Davis Professor Daniel Karp's lab highlighting the environmental, agricultural, and food safety impacts of conserving bird habitat around farms. A related study in 2020 found that farms with natural habitat attracted more insect-eating birds — and fewer strawberry-eating birds — so that farmers experience less berry damage on farms with more habitat nearby. Such habitats also bring greater numbers of bird species to the landscape.
“All together, these studies suggest that farming landscapes with natural habitat tend to be good for conservation, farmers, and public health,” said Karp.
Additional co-authors of this study include Karina Garcia and David Gonthier of University of Kentucky, Claire Kremen of UC Berkeley and the University of British Columbia, William E. Snyder of University of Georgia, and Erin Wilson-Rankin of UC Riverside.
The research was funded by the USDA and UC Davis Department of Wildlife, Fish and Conservation Biology./h3>/h3>/h2>
Professor of Cooperative Extension shares career story, appreciation for UC Davis
After growing up in northern British Columbia, in a remote smelter town called Kitimat (“an 8-hour drive from the nearest McDonald's”), University of California Professor of Cooperative Extension Linda J. Harris embarked on an academic journey that crisscrossed North America and eventually led to her election as a Fellow of the American Association for the Advancement of Science.
AAAS, the world's largest multidisciplinary scientific society and publisher of the journal Science, recently announced the election of its 2021 class, which will be inducted during its annual meeting, Feb. 17-20.
In addition to Harris – a faculty member in UC Davis' Department of Food Science and Technology – four other UC Agriculture and Natural Resources affiliates will be inducted: Helene Dillard, dean of the UC Davis College of Agricultural and Environmental Sciences; Kathryn Uhrich, dean of the UC Riverside College of Natural and Agricultural Sciences; and UC Berkeley Professors Rodrigo Almeida and Paolo D'Odorico.
Harris, a Certified Food Scientist, recently shared her thoughts on the value of extension work, her contributions to the field, UC Davis' support for women in academia, and the arc of her career journey.
How did you get your start in food science and microbiology?
I was interested in science at an early age. As an undergraduate student at the University of Victoria in Victoria, B.C., I enrolled in biochemistry at the suggestion of my high school biology teacher. In my second year, I switched to the University of Alberta in Edmonton, Alberta and decided to review the course catalog – a paper version! When I got to the section on Food Science, the applied nature of the field just sounded right and I never looked back.
However, I didn't do particularly well in microbiology as an undergraduate student – too much memorization for me. At the end of my B.S. I was ready for a job in the food industry and took the very first job I was offered – ironically enough as a dairy microbiologist in a quality control lab. Thankfully, that job opened my eyes to the possibilities in microbiology. What was memorization turned into something I learned through doing and I was hooked.
Two years later, I was ready to go back to school and contacted a professor of food safety microbiology at the University of Alberta who fortunately had funding for me. During my M.S. degree in food microbiology, he encouraged me to pursue the Ph.D. – which was not something I had ever considered – and that led me to leave Canada and head to North Carolina State University and a Ph.D. in microbiology in the Food Science Department, where I worked on a project related to the fermentation of sauerkraut.
I did have one publication related to food safety during my time at NC State, and when I took my first faculty position back in Canada [University of Guelph in Ontario] I continued to work in food safety, mostly with meat and meat products.
I am so glad that I saw the advertisement for my current position and that I followed my instincts to apply for the job. The opportunities to grow professionally and to work in the food safety area at UC Davis, within the Cooperative Extension network in California, and with collaborators across the U.S., and around the world, have been enormous, and I am extremely grateful for the path that led me here.
February 11 is the United Nations-designated “International Day of Women and Girls in Science.” How has UC Davis supported women in your scientific field?
My career in STEM [science, technology, engineering and math] has been very rewarding and many of the gender barriers I faced early on have been addressed. I feel very fortunate to have landed at UC Davis and I am thankful that there is a long history of addressing these barriers at this institution.
When I was hired in 1996, the Department of Food Science and Technology was about 25% women and both the department chair and dean of the college were women. I had never been in a department or college with so many women faculty, including in positions of leadership. It was a very important consideration in my move. Today our department is 50% women and I proudly served for five years as the second woman department chair, from 2016 to 2021.
As a first-generation university graduate raised by a single mother, you have a unique perspective in encouraging young people on their path toward a STEM career. What advice do you have for them?
To those contemplating a career in STEM, I would say: be open to new opportunities and adventures – you never know where they may lead you. Get involved in leadership in any capacity you can from student organizations or around other things that interest you. Skills that you learn with these types of activities will be invaluable to your career.
I am very much an introvert and had to work hard to overcome my fear of public speaking. In addition to leadership roles in student clubs, I joined Toast Masters while working on my Ph.D. These activities had a huge impact on building my confidence and helped influence my career choices.
In the AAAS Fellows announcement, it says you were elected for “contributions to the field of food safety microbiology, especially related to control of Salmonella and other pathogens in low-moisture foods and fresh produce.” Is that your proudest achievement in the field?
I am most proud of the work described by that short statement especially as it applies to California-grown commodities. I would say that my laboratory is best known for work with the tree nut industry – almonds, pistachios and walnuts, as well as a range of types of fresh produce grown in this state.
My laboratory has worked to understand behavior, movement, prevalence, and especially control of foodborne pathogens like Salmonella during production in the field through harvest and postharvest handling all the way through to consumer practices.
I have been fortunate to have many terrific state, national and international collaborators and an outstanding group of people working in my laboratory as we set the foundation for some of the food safety research in tree nuts and produce. It has been most gratifying to watch the significant growth in these fields of investigation, especially with a new generation of scientists that span the country and beyond.
Another “hat” you wear is UC Cooperative Extension specialist. How have you contributed to food safety knowledge and practices in our communities?
I think you will see that my “hats” are not that different. The research from my laboratory has provided the foundation for several commodity-based, food-safety risk assessments – for almonds, pistachios, and walnuts. And these, in turn, have been used in support of regulations or helped guide implementation of safer food industry practices. Our research has also informed several publications aimed at consumer handling of fresh fruits and vegetables and has been cited in regulations pertaining to fresh produce safety. It is gratifying to see our research being used.
My research and extension work are very integrated. One feeds the other. Because I have been able to interact with stakeholders (especially integral to my position as a Cooperative Extension specialist), I have been able to understand firsthand some of the pressing food-safety issues and challenges in California. These stakeholder interactions have largely formed the basis for most of my research and extension grant proposals over the years. The collaborations that have resulted from extension activities have opened doors and access to many unique opportunities for sample collection and research exploration./h3>/h3>/h3>/h3>/h3>/h2>
E. coli and Salmonella are rare in wild birds, Campylobacter more common
Concerns over foodborne risk from birds may not be as severe as once thought by produce farmers, according to research from the University of California, Davis, that found low instances of E. coli and Salmonella prevalence.
While the research found that the risk is often low, it varies depending on species. Birds like starlings that flock in large numbers and forage on the ground near cattle are more likely to spread pathogenic bacteria to crops like lettuce, spinach and broccoli, according to a study of food safety risk and bird pathogens from the University of California Davis. In contrast, insect-eating species were less likely to carry pathogens.
The findings, published in the journal Ecological Applications, suggest that current practice of removing bird habitats around produce growers' farms over concerns the animals could bring foodborne pathogens into their fields may not solve the problem.
“Farmers are increasingly concerned that birds may be spreading foodborne diseases to their crops,” said Daniel Karp, the senior author on the study and an assistant professor in the UC Davis Department of Wildlife, Fish and Conservation Biology. “Yet not all bird species are equally risky.”
Only one foodborne disease outbreak in produce has been conclusively traced to birds: a Campylobacter outbreak in peas from Alaska. While the bacteria can cause diarrhea and other foodborne illness in humans, it's less of a concern to growers than E. coli and Salmonella, which have been responsible for multiple outbreaks across the nation.
In this study, researchers compiled more than 11,000 bacteria tests of wild bird feces and found that Campylobacter was detected in 8 percent of samples. But pathogenic E. Coli and Salmonella were only found in very rare cases (less than 0.5%).
In addition to the bacteria tests, researchers conducted roughly 1,500 bird surveys across 350 fresh produce fields in Western states and collected more than 1,200 fecal samples from fields. They then modeled the prevalence of pathogens in feces, interactions with crops, and the likelihood of different bird species to defecate on crops to determine risk.
Insect-eating birds pose lower risk
Based on the data, insect-eating birds, such as swallows, present a lower risk, while birds that flock near livestock, such as blackbirds and starlings, are more likely to transmit pathogens.
The data can help the agricultural industry determine risk and take action, such as separating produce crops from cattle lands. They also don't need to treat all birds the same.
“Maybe farmers don't need to be quite as concerned about all types of birds,” Karp said. “Our data suggest that some of the pest-eating birds that can really benefit crop production may not be so risky from a food-safety perspective.”
Removing habitat can backfire
This study and the authors' prior work indicate that removing habitat around farms may actually benefit the species that pose more risk and harm the beneficial, pest-eating ones that are less risky to food safety. This is because many prolific insect-eaters may visit crop fields to eat pests but need nearby natural habitats to survive. In contrast, many of the bird species that most commonly carry foodborne pathogens readily thrive on both cattle farms and produce farms without natural habitat nearby.
Insect-eating birds that forage in the tree canopy pose minimal threat because they are less likely to carry foodborne pathogens and come into direct contact with produce. They can also be valuable parts of the ecosystem, particularly if they eat pests that can harm crops. Installing bird boxes could attract the pest-eaters, as well as help with conservation efforts.
“We basically didn't know which birds were problematic,” said lead author Olivia Smith, a postdoctoral researcher at Michigan State University who was at University of Georgia when the paper was written. “I think this is a good step forward for the field.”
Additional co-authoring institutions include James Cook University, UC Berkeley, UC Riverside, University of Kentucky, University of Texas, Virginia Polytechnic Institute and State University, Washington State University, BioEpAr, The Nature Conservancy and Van Andel Institute.
The research was funded by the United States Department of Agriculture and the National Science Foundation./h3>/h3>/h3>/h2>
The COVID-19 pandemic hit farmers hard. Supply chains were disrupted and even non-traditional agritourism revenue streams such as hay mazes and on-farm events had to be canceled due to shelter-in-place mandates.
On the other hand, demand for local farm products skyrocketed, and thus many farmers and ranchers needed a quick pivot strategy and a set of new skills.
UC Sustainable Agriculture Research and Education Program (SAREP) was well-positioned to support this shift toward direct sales, pulling in trusted community partners and experienced farmers and ranchers to put together a comprehensive webinar series, “Agritourism and Direct Sales: Best Practices in COVID Times and Beyond”.
Funded by a USDA Farmers Market Promotion Program (FMPP) grant, the webinar series is part of a three-year project, Strengthening California Local Food Networks with Agritourism and Direct Sales, which provides trainings and technical assistance to farmers and ranchers on how to diversify their revenue streams.
The strength of the series, which includes eight webinars that were recorded earlier this year and are available online, lies in the collaborations among the UC SAREP Agritourism Program, UCCE, community groups, and farmers and ranchers.
The series features a range of speakers, including representatives from community organizations, technical experts, academic researchers, and farmers – all coming together to build resilience and adaptability for small-farming operations and the agritourism industry across California during the pandemic and after.
“It's great to collaborate with other organizations and regions, to learn from each other and to broaden our networks, as we are all working to create more resilient and sustainable food systems,” said Carmen Snyder, executive director of Sonoma County Farm Trails, one of the nonprofit partners on this project.
And because of those strong partnerships, the webinar topics reflected the on-the-ground needs facing agricultural producers.
“COVID initially dramatically affected farmers' restaurant contracts, with many losing more than 80% of their accounts overnight,” Snyder said. “CSAs [Community Supported Agriculture], on the other hand, couldn't keep up with the demand, and all of our CSA members were full and had wait lists for the first time ever. Producers pivoted by creating more online stores, including pick-up and delivery options. It was a challenge for them to navigate the new technology and platforms.”
The “Online Sales Options and Methods” webinar, a partnership with the Community Alliance with Family Farmers (CAFF), provided an overview of several e-commerce marketing and online sales strategies that farmers can implement to diversify their revenue pathways and reach new customers. CAFF stressed the importance of farmers enhancing their resiliency through e-commerce.
The webinar also featured Ciara Shapiro, the owner of AM Ranch in Penn Valley, who shared her experience with online marketing and how it helped her and her husband survive the pandemic when the restaurants and farmers markets they sold to shut down. This personal and informative webinar demonstrated the effectiveness of online sales and marketing, while highlighting available resources from groups like CAFF.
The “Safe, Healthy and Successful Farm Stands” webinar was aimed at farms of all sizes and organizations that operate or advise agricultural operations using farm stands as a form of revenue. The webinar provided an outline of the rules and regulations that farm stand operators needed to follow during COVID – as well as during business-as-usual times.
Both farmers saw an increase in farm stand business during the pandemic, which Yagi attributed to the “traffic storm of people” who attended their annual plant sale fundraiser and came to participate in new farm outdoor activities and volunteer opportunities. Yagi also noted the growing number of low-income individuals who were unable to access fresh produce during the pandemic.
The speakers' shared experiences running successful farm stands gave audience members tangible examples and real-time information on how to incorporate farm stands into their businesses.
Carmen Snyder of Sonoma County Farm Trails, which helped circulate the recorded webinars to their network of farmers and ranchers, remarked: “These webinars were extremely helpful for local producers, to get clarity on best pandemic practices during these challenging times and to learn how other producers are adapting and navigating the circumstances.”
A summer of smoke and ash in many parts of California has raised questions about the safety of produce growing on farms and in the garden, eggs laid by chickens who peck around in ash-laden areas, and remediation needed to safely and effectively grow food in the future.
UC Agriculture and Natural Resources brought together experts who have researched the effects of previous fires' fallout and studied soil contaminants to share their insight in a two-hour webinar now available on YouTube.
“The No. 1 health concern during a fire is smoke inhalation, and it's been well documented that wildfire smoke can negatively impact both the heart and the lungs,” said Claire O'Brien, a pharmacology and toxicology doctoral student at UC Davis. “However, the chemicals found in the smoke don't just stay in the air. They can deposit onto plants and into soil and water.”
Although every fire is unique, some generalizations can be drawn from research conducted following previous fires. UC Cooperative Extension food systems advisor Julia Van Soelen Kim detailed a study conducted following the October 2017 wildfires in Sonoma County and across the North Bay.
With the help of UC Master Gardener and community volunteers, the researchers collected over 200 samples of homegrown collard greens, lettuces, kale and chard that were exposed to wildfire smoke and ash. A subset of the samples were analyzed by a private laboratory.
“There was very low concern about chemicals on produce,” Van Soelen Kim said. “No samples had detectable levels of lead, arsenic, mercury or chromium. And that's a huge sigh of relief.” However, analytical results vary by site, site history and by fire event, and few have pre-fire baseline data to compare with.
Van Soelen Kim said basic food-safety practices should be followed when preparing to eat food grown in a home garden, regardless of ash or smoke contamination.
“You should always wash your hands before and after harvesting, and wash your produce in running water to mitigate any kind of potential risk,” she said.
Are backyard chicken eggs safe to eat?
Another study outlined at the webinar used a similar process to determine whether there might be contaminants in the eggs laid by backyard poultry that live and feed in areas exposed to wildfire ash and smoke.
Scientists know from previous research that chickens exposed to lead in their environment can produce eggs with high lead content and that heavy metal content of ash from urban wildfires is higher than from rural wildfire.
“We combined those two pieces of research with what we know that chickens do all day: they peck at the ground for hours on end,” said Todd Kelman, a veterinarian in the School of Veterinary Medicine at UC Davis. “That makes for a pretty good hypothesis that urban wildfire could pose a risk for the production of eggs and poultry that contain heavy metals.”
Kelman and his team put out a call for eggs from backyard poultry and received samples from 344 premises in fire-affected and non-fire-affected areas of California.
Surprisingly, egg samples that contained higher lead levels came from parts of the state that were not directly impacted by ash and smoke.
“Did our data support our hypothesis that proximity to urban wildfire is a driving source for lead in eggs of backyard poultry? The answer is not so much,” Kelman said. “So, is it safe to eat eggs from your backyard poultry? We can't give you a definitive answer to that question. But we do suggest you assess your risk and reduce the risk of contamination.”
Practices that reduce the risk include keeping chickens off the ground, using a chicken feeder that prevents spillage onto the ground and making calcium readily available, for example in the form of oyster shells, because calcium can prevent the absorption of lead. Making sure that chickens are provided uncontaminated water is also an important part of risk reduction.
For confirmation on the safety backyard chickens and their eggs, lab tests for eggs are available for $60 from the California Animal Health and Food Safety Laboratory at UC Davis, or chickens may be submitted to CAHFS for necropsy.
Are soils safe for growing food after a fire?
Fire effects on soil is another consideration in burned areas, said UC Cooperative Extension urban agriculture advisor Rob Bennaton.
“Fires heat topsoil layers. They reduce the amount of living micro-organisms at the site of the burn, and also affect organic matter and nutrients. Ash deposits over time may make soils more alkaline,” he said. “As a result of these combined factors, there are temporary changes in nutrient levels and the capacity for soils to exchange nutrients for optimal plant growth and nutrition.”
With proper land care and management, soils can be remediated over time.
“It won't happen overnight. Soils were developed over millions of years,” he said.
Some ways to improve safety when gardening in fire-affected areas including keeping the soil covered with wood chips or other landscape mulch to reduce airborne soil dust. Use drip irrigation to prevent up splash onto the undersides of growing vegetables. Promote good drainage, especially at the bottom of slopes to prevent the concentration of contaminants.
Lab tests are often needed to determine the soils' post-fire characteristics. “Don't guess, but test,” Bennaton said.
The UC Master Gardener Program can provide technical assistance to help home gardeners find resources for home soil testing, he said.
Additional resources and information shared during the webinar include:
Post-fire soil resources and soil testing information
- UCCE publication on Soils in Urban Agriculture with soil testing & sampling information
- The UC ANR Healthy Soils Website, which has many resources worth reviewing.
- Tips for Interpreting Soil Analysis
- UC Master Gardener of Sonoma County 2018 workshop video “Effects of fire on soil”
Post-fire food safety
- Research on produce safety and backyard chicken egg safety after the 2017 wildfires in California is available on this web page. To view a past webinar recording with these research findings, click this link.
- Poultry wildfire resources from the UC Davis School of Veterinary Medicine:
- Best Practices for Produce Safety After Fire
- Understanding Risk: A community guide for assessing the potential health impacts of locally grown produce exposed to urban wildfire smoke
Firewise and sustainable home landscaping design in the defensible space zone
- Visit the UC Master Gardener Program of Sonoma County firewise landscaping web page.
- For a recent firewise & sustainable design and maintenance video by the Resilient Landscapes Coalition.
Impact of smoke & ash on plants
[This article was first published Nov. 3, 2020]