Nematologist and plant pathologist Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology and coordinator of the department's seminars for the 2021-22 academic year, has announced the list of fall quarter seminars, which begin Sept. 29 and conclude Dec. 1.
All will be held at 4 p.m. on Wednesdays, Pacific Time, and will include both in-person and virtual seminars.
"We we have an exciting list of seminars that includes both national and international speakers," Siddique said.
The in-person seminars will take place in Room 122 of Briggs Hall, located off Kleiber Hall Drive. These seminars will be recorded for later viewing.
Three of the seminars will be virtual. "Virtual seminars will be accomplished using the Zoom meeting software package," Siddique related. A Zoom link will be provided a week before the seminar.
First on tap will be the exit seminar of doctoral candidate Hanna Kahl of the lab of UC Davis distinguished professor Jay Rosenheim. She will speak on "Herbivory of Citrus Fruit by European Earwigs in California" at 4 p.m., Wednesday, Sept. 29. This will be an in-person seminar.
No seminar will be held Nov. 3, which conflicts with the annual meeting of the Entomological Society of America (ESA), set Oct. 31-Nov. 3 in Denver, Colo. Many faculty attend the annual meeting.
The seminars are open to all interested persons.
Siddique joined the UC Davis Department of Entomology and Nematology in July 2019 after serving as a research group leader for several years at the University of Bonn, Germany. Research in the Siddique lab focuses on basic as well as applied aspects of interaction between parasitic nematodes and their host plants. "The long-term object of our research is not only to enhance our understanding of molecular aspects of plant–nematode interaction but also to use this knowledge to provide new resources for reducing the impact of nematodes on crop plants in California."
For further information on the seminars, contact Siddique at firstname.lastname@example.org.
Molecular nematologist Peter DiGennaro of the University of Florida's Department of Entomology and Nematology will present his seminar on "Gaps in Molecular Plant Nematology" from 4:10 to 5 p.m. (Link to the form to join the Zoom meeting.)
"What has molecular plant nematology done for me?" asks DiGennaro, who will present a collection of short stories describing the need for, and benefits of, a symbiosis-centered approach in understanding plant-nematode interactions at the molecular level.
"Dr. DiGennaro does great work on plant-nematode interactions," said seminar host Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology.
DiGennaro, interested in the molecular basis of nematode parasitism in plants, primarily researches the root-knot nematode (Meloidogyne spp.); specifically, he is concerned with nematode-derived signaling molecules and subsequent host responses. His lab utilizes an array of genomic, genetic and biochemical tools to understand the fundamental mechanisms behind nematode host range, parasitism, and plant responses.
"The goal of our research is to develop novel avenues for safe and sustainable nematode control strategies," he says.
DiGennaro received his bachelor of science degree in biochemstry in 2007 from the State University of New York at Geneseo, and his doctorate in functional genomics, with a minor in plant pathology, from North Carolina State University (NCSU) in 2013. At NCSU, he studied the molecular basis for nematode parasitism in plants. He served as a postdoctoral researcher with the Plant Nematode Genomics Group at both NCSU and at UC Berkeley before joining the University of Florida, Gainsville, in July 2016.
Coordinating the seminars is Cooperative Extension specialist Ian Grettenberger, assistant professor, UC Davis Department of Entomology and Nematology. For any technical issues, he can be contacted at email@example.com.
If you're a gardener, you're aware that nematodes are "microscopic, eel-like roundworms" and that "most troublesome species in the garden are those that live and feed within plant roots most of their lives and those that live freely in the soil and feed on plant roots," according to the UC Integrated Pest Management Program website on nematodes.
If you attended the ninth annual UC Davis Biodiversity Museum Day, you learned hands-on information from nematologists Christopher Pagan and Corwin Parker, doctoral students who study with major professor Steve Nadler, professor and chair of the UC Davis Department of Entomology and Nematology.
Pagan and Parker held forth at their display in the Academic Surge Building, where they fielded questions about nematodes and showed specimens to the visitors. The nematode collection was one of 13 museums or collections featured at the Biodiversity Museum Day, always held the Saturday of Presidents' Weekend.
Many visitors asked what nematodes are, they related.
Other common questions asked:
- Do I have nematode parasites?
- How dangerous are nematode parasites/can they kill you?
- How long do they live?
- How many species ofode are there?
- Are soil nematodes good or bad for my garden?
Parker shared some of the answers:
Do I have nematode parasites?
Probably not unless you've been traveling a lot. The most common nematode parasite of humans in the US is pinworm which most children get, but not adults. Worldwide however, hundreds of millions of people are infested with parasites including Ascaris, hookworm, and whipworm.
How dangerous are nematode parasites/can they kill you?
Nematode parasites are usually relatively benign unless you have a lot of them. Potentially fatal exceptions do exist, such as zoonotic infections of rat lungworm and raccoon roundworm, but those are rare.
How long do nematodes live?
It depends on the species and life history. Parasitic nematodes can live for a long time, while most free-living nematodes have relatively short lifespans. Some nematodes that live in harsh environments such as deserts can extend their lives by going into a state of suspended animation until environmental conditions are optimal.
How many species of nematode are there?
More than 30,000 described species, but it's estimated there are more than 1 million total.
Are soil nematodes good or bad for my garden?
Most soil nematodes are neutral to beneficial for your garden. They're an integral part of the soil ecosystem and help with nutrient cycling, and some kill of root-feeding insects. There are some plant-parasitic nematodes, but most don't cause significant damage.
UC Davis Biodiversity Museum Day
In addition to the nematode collection, the UC Davis Department of Entomology and Nematology showcased the Bohart Museum of Entomology and the Häagen-Dazs Honey Bee Haven. Other participating museums or collections at this year's Biodiversity Museum Day: the Botanical Conservatory, Arboretum and Public Garden, California Raptor Center, Museum of Wildlife and Fish Biology, Paleontology Collection, Phaff Yeast Culture Collection, Viticulture and Enology Culture Collection, Anthropology Museum, Center for Plant Diversity, and Marine Invertebrate Collection.
If you missed it, calendar the 10th anniversary Biodiversity Museum Day in 2021. The event always takes place the Saturday of Presidents' Day Weekend.
"Owl that" at more at the ninth annual UC Davis Biodiversity Museum Day on Saturday, Feb. 15 when 13 museums and collections showcase their projects.
The event, to take place from 9 a.m. to 4 p.m., is free and family friendly. All 13 sites are within walking distance except for the Häagen-Dazs Honey Bee Haven on Bee Biology Road and the Raptor Center on Old Davis Road.
The science-based event, always held the Saturday of Presidents' Day weekend, features the diversity of life. It is billed as a “free, educational event for the community where visitors get to meet and talk with UC Davis scientists from undergraduate students to staff to emeritus professors and see amazing objects and organisms from the world around us,” according to Biodiversity Museum Day coordinator Tabatha Yang, education and outreach coordinator for the Bohart Museum of Entomology. The schedule is online.
Last year's event drew more than 4000 visitors. Schedules vary from collection to collection.
- The Botanical Conservatory, the Greenhouses along Kleiber Hall Drive, will be open from 9 a.m. to 4 p.m.
The following five will be open from 9 a.m. to 1 p.m.:
- Arboretum and Public Garden, Shields Oak Grove, alongside the Vet School, Garrod Drive on campus
- Bohart Museum of Entomology, Room 1124 and Main Hall of the Academic Surge Building, Crocker Lane
- California Raptor Center, 340 Equine Lane, off Old Davis Road
- Museum of Wildlife and Fish Biology, Room 1394 and Mail Hall, Academic Surge Building, Crocker Lane
- Paleontology Collection, Earth and Physical Sciences Building, 434 LaRue Road
Two collections will be open from 10 a.m. to 2 p.m.:
- Phaff Yeast Culture Collection, Robert Mondavi Institute of Wine and Food Science, 392 Old Davis Road, on campus
- Viticulture and Enology Culture Collection, Robert Mondavi Institute of Wine and Food Science, 392 Old Davis Road, on campus
These four will be open from noon to 4 p.m.:
- Anthropology Museum, 328 Young Hall and grounds
- Center for Plant Diversity, Sciences Laboratory Building, off Kleiber Hall Drive
- Häagen-Dazs Honey Bee Haven, Bee Biology Road, off Hopkins Road (take West Hutchison Drive to Hopkins)
- Nematode Collection, Sciences Laboratory Building, off Kleiber Hall Drive
- Marine Invertebrate Collection, Sciences Laboratory Building, off Kleiber Hall Drive
New this year will be public talks from noon to 1 p.m. in 194 Young Hall. Speaking will be butterfly expert Art Shapiro, distinguished professor of evolution and ecology; Gabriella Nevitt, professor, Department of Neurobiology, Physiology and Behavior, College of Biological Sciences; and Melanie Truan, staff research associate, Museum of Wildlife and Fish Biology and former postdoctoral researcher at UC Davis. Titles will be announced.
All participating museums and collections have active education and outreach programs, Yang said, but the collections are not always accessible to the public. Maps, signs and guides will be available at all the collections, and also online at http://biodiversitymuseumday.edu, and on social media, including Facebook and Twitter, @BioDivDay.
Capsule information on each:
Arboretum and Public Garden, 9 a.m. to 1 p.m.
Melissa Cruz Hernandez, outreach and leadership program manager, Arboretum and Public Garden, notes that the Arboretum activities will all be at the Shields Oak Grove, alongside the School of Veterinary Medicine, Garrod Drive. This is a change from last year. The Arboretum Ambassadors are planning fun-filled oak tree conservation activities the whole family will enjoy. “Learn about the many contributions oaks make to sustaining habitat biodiversity, what UC Davis and the Arboretum and Public Garden are doing to protect the trees, and win prizes for participating in the games at the Shields Oak Grove!”
Hernandez announced the following Arboretum activities:
- GATEways Outreach Ecological group: Learn what it is like to live as an oak tree through a life size board game and win prizes! Explore the ecological impacts oaks have in our community and discover about how the changing climate is impacting this important species.
- GATEways Outreach Humanities group: Did you know the US Constitution was signed in oak gall ink? Join us and try out oak gall ink for yourself, and engage in mindfulness activities.
- Museum Education: Take a self-guide tour through our iconic oak grove and learn about the unique characteristics of 12 of our favorite trees.
- Emily Griswold Tour: Join oak expert and Director of GATEways Horticulture, Emily Griswold, on an engaging tour of the oak grove. Uncover behind the scenes information about the grove and get your quercus questions answered.
The Bohart Museum of Entomology, located in Room 1124 of the Academic Surge Building on Crocker Lane, is the home of a global collection of nearly 8 million insect specimens. Insect scientists will meet with the public to help them explore insects and spiders (arachnids). Highlights will include the 500,000-specimen butterfly/moth collection, curated by entomologist Jeff Smith. The Bohart maintains a live “petting zoo,” comprised of Madagascar hissing cockroaches, walking sticks and tarantulas. Also, the UC Davis Library set up a Mary Foley Benson exhibit in the Academic Surge hallway. It will be up ponly for the month of February. "The library, is, of course full of special collections including very important research materials on bees and on nematodes," noted Tabatha Yang, the Bohart education and outreach coordinator.
California Raptor Center, 9 a.m. to 1 p.m.
Visitors to the The California Raptor Center, located at 1340 Equine Lane, Davis, just off Old Davis Road, will see a living collection of non-releasable raptors. The center's educational ambassador birds will be out "on the glove," so visitors can get a close view of the birds of prey, and talk to the volunteers. Julie Cotton, volunteer and outreach coordinator, said visitors will see "on the glove" Swainson's hawks, a white-tailed kite, barn owl, great-horned owls and a eregrine falcon. Viewable in their exhibits will be golden eagles, American kestrels, turkey vultures, prairie falcon and Western screech owls.
Museum of Wildlife and Fish Biology, 9 a.m. to 1 p.m
The Museum of Wildlife and Fish Biology, located in Room 1394 of the Academic Surge Building, Crocker Lane (off LaRue Road) will feature an action packed morning with displays highlighting carnivores, bats, reptiles and fish, said director Andrew Engilis Jr. Visitors will see specimen preparation demonstrations. Also planned is a kids' craft table.
Paleontology Collection, 9 a.m. to 1 p.m.
Visitors at the Paleontology Collection, located in the Earth and Physical Sciences Building, 434 LaRue Road, can view fossil specimens dating from as old as 550 million years ago to more recent animal skeletons. Paleontology graduate students in invertebrate and vertebrate paleontology will answer questions and provide interesting factoids.
The Phaff Yeast Culture Collection in the Department of Food Science, and the Wine Yeast and Bacteria collection in the Department of Viticulture and Enology, are jointly hosting exhibits and tours. They are located at the Robert Mondavi Institute Teaching Winery and Brewery Building, 392 Old Davis Road, on campus. Visitors to the yeast collection exhibits can taste kombucha and Vegemite, smell lots of different species of yeast, look at yeast and bacteria cells under the microscope, learn about the history of yeast research at UC Davis, and hear about the latest discoveries coming out of the UC Davis yeast collections, says Kyria Boundy-Mills, curator of the Phaff Yeast Culture Collection, Food Science and Technology.
Anthropology Museum, noon to 4 p.m.
Visitors to the Department of Anthropology Museum, located in 328 Young Hall, will see collections of archaeological, ethnographic, biological and archival materials. They will "experience our cultural diversity through art pieces from around the world, our complex evolutionary history through primate skeletons and fossil hominin casts, or how archaeologists at UC Davis work across the globe to understand past cultural diversity through the artifacts people leave behind," said Professor Christyann Darwent of the Department of Anthropology. "There will also be an opportunity for visitors to learn to make tools from obsidian stone and to throw a spear with an atlatl."
The Botanical Conservatory, 9 a.m. to 4 p.m.
"We again expect our cacao tree to be loaded with ripe fruit for display amongst the plethora of plant we'll be displaying!" says collections manager Ernesto Sandoval. "We'll also be showcasing our very well established pond that made a splash last year and newly added small epiphyte tree along with three towering Titan Arums in leaf! if the outdoor weather is good, Visitors will be encouraged to take a walk over to the nearby Joe and Emma Lin Biological Orchard and Gardens and bask in the biodiversity of these sizable plots of Biodiversity and the neatly pruned fruit tree orchard." The Botanical Conservatory is located on Kleiber Hall Drive.
Center for Plant Diversity Herbarium, noon to 4 p.m.
Visitors to the Center for Plant Diversity Herbarium, located in Room 1026 of the Sciences Laboratory Building, central campus (off Kleiber Hall Drive), can tour the collection area, see plant pressing and mounting demonstrations, “pet our plant zoo” (a table showcasing the diversity of plants, including mosses, pine cones, ferns and flowering plants); look and plants under a microscope, and view oak exhibit. The children's activity? Making herbarium specimens, says curator Ellen Dean.
Häagen-Dazs Honey Bee Haven, noon to 4 p.m.
Visitors to the Häagen-Dazs Honey Bee Haven, a half-acre bee demonstration garden located next to the Harry H. Laidlaw Jr. Honey Bee Research Facility, Bee Biology Road, can learn about bees and see the plants they frequent, said manager Christine Casey. Guests will learn how to identify bees. They can also use a bee vacuum to catch, observe and release bees. A six-foot long sculpture of a worker bee by artist Donna Billick of Davis anchors the haven.
Nematode Collection, noon to 4 p.m.
The nematode collection will open from noon to 4 p.m. in the Science Laboratory Building, off Kleiber Hall Drive. It will feature both live and slide-mounted nematodes, as well as jars of larger parasites. Nematodes, also called worms, are described as “elongated cylindrical worms parasitic in animals or plants or free-living in soil or water. They exist in almost every known environment.”
Marine Invertebrate Collection, noon to 4 p.m.
The Marine Invertebrate Collection in the Science Laboratory Building, off Kleiber Hall Drive, will have touch tanks, preserved specimens, and some displays showing aspects of marine ecology and evolution. There will also be a seashell activity for kids, said Ivana Li. "In our touch tanks, we'll likely have sea stars and sea urchins. We are showing all the different geographical locations from which they were collected. This means that people can match up where specimens like our slipper lobster or salp came from. Other displays that we will have are on how to distinguish true crabs from other animals, and a display on seaweed ecology."
The sponsors made it all possible to have this event free to the public, Yang said. Ink Monkey is providing 300 t-shirts for the volunteers, and Marrone Bio Innovations and Novozymes are also major supporters. Other supporters include the UC Davis Honey and Pollination Center, UC Davis Library, White Labs Inc., Margaret Berendsen, Fletchers Real Estate, Peter Lash and Dan Potter.
Further information is available on the UC Davis Biodiversity Museum Day website.
They are a major threat to global food security, says Sebastian Eves-van den Akker of the Department of Plant Sciences, University of Cambridge, UK.
Eves-van den Akker will speak on "Effector Gene Birth in Plant-Parasitic Nematodes: Furnishing the Immunity and Development-Altering 'Tool Box' " at the Wednesday, Jan. 22th seminar of the UC Davis Department of Entomology and Nematology. His seminar is from 4:10 to 5 p.m. in 122 Briggs Hall, off Kleiber Hall Drive, UC Davis campus. Host: nematologist Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology.
In a recent publication in PLOS Genetics titled "Effector Gene Birth in Plant Parasitic Nematodes: Neofunctionalization of a Housekeeping Glutathione Synthetase Gene," Eves-van den Akker noted that "Plant parasitism has arisen four times independently within the phylum Nematoda, resulting in at least one parasite of every major food crop in the world. Some species within the most economically important order (Tylenchida) secrete proteins termed effectors into their host during infection to re-programme host development and immunity. The precise detail of how nematodes evolve new effectors is not clear."
He and his colleagues reconstructed the evolutionary history of a novel effector gene family. They showed that "during the evolution of plant parasitism in the Tylenchida, the housekeeping glutathione synthetase (GS) gene was extensively replicated. New GS paralogues acquired multiple dorsal gland promoter elements, altered spatial expression to the secretory dorsal gland, altered temporal expression to primarily parasitic stages, and gained a signal peptide for secretion. The gene products are delivered into the host plant cell during infection, giving rise to 'GS-like effectors.'"
"Our results demonstrate the re-purposing of an endogenous housekeeping gene to form a family of effectors with modified functions," Eves-van den Akker wrote. "We anticipate that our discovery will be a blueprint to understand the evolution of other plant-parasitic nematode effectors, and the foundation to uncover a novel enzymatic function."
Eves-van den Akker studied biology at the University of Leeds from 2007 to 2019. During his final year, in the lab of Professor P. E. Urwin, he became interested in plant-pathology, and "the fascinating and potentially useful abilities of plant-parasitic nematodes." From 2010 to 2014, he studied for a doctorate in plant-nematode “effectors,” jointly appointed between the University of Leeds and The James Hutton Institute.
In 2015, he was awarded a three-year Anniversary Future Leaders Fellowship from the Biotechnology and Biological Sciences Research Council (BBSRC), part of UK Research and Innovation, a non-departmental public body funded by a grant-in-aid from the UK government. His fellowship was designed to understand the structural and molecular detail of nematode effector function.
That led to a discovery that provided what he calls "the first tangible insight into the regulatory processes underlying plant-nematode parasitism," and that in turn, resulted in his five-year BBSRC David Phillips Fellowship in 2018. With this second fellowship, he established a research group at the University of Cambridge and was elected Fellow of King's College.
Community ecologist Rachel Vannette, assistant professor, is coordinating the winter quarter seminars, all held on Wednesdays at 4:10 p.m. in 122 Briggs Hall. The remaining schedule:
Wednesday, Jan. 29
Elizabeth Crone, Tufts University, Medford, Mass.
Topic: "Why Are Monarch Butterflies Declining in the West?"
Hosts: Neal Williams, professor; Rachel Vannette, assistant professor
Wednesday, Feb. 5
Andrew Young, postdoctoral scholar at California Department of Food and Agriculture, Pest Diagnostic
Topic: Syrphids (title to be announced)
Host: Lynn Kimsey, professor and director of the Bohart Museum of Entomology
Wednesday, Feb. 12
Kevin Rice, University of Missouri, Columbia
Topic: "Lasers, Drones, and Growth Promoting Fungus: New Technologies for IPM"
Host: Ian Grettenberger, assistant professor
Wednesday, Feb. 19
Mercedes Burns, University of Maryland,Baltimore County
Topic: (pending) She studies evolutionary ecology of reproductive traits and behaviors, sexual conflict, reproductive polymorphism, arthropod biology
Host: Jason Bond, professor and Schlinger Chair in Insect Systematics
Wednesday, Feb. 26:
Faculty Flash Talks (featuring series of faculty members, including Rachel Vannette, Ian Grettenberger, Shahid Siddique, Geoffrey Attardo, Jason Bond)
Wednesday, March 4
Brendon Boudinot, doctoral candidate, Phil Ward lab, exit seminar
Topic: "Morphology and Evolution of the Insects, and the Ancestors of the Ants"
Host: Phil Ward, professor