- Author: Steve Tjosvold and Steve Koike
Diseases, disorders and other plant problems are critical concerns for the wholesale nursery. These include biotic problems — caused by living organisms such as pathogens, nematodes, and insects and other arthropods — as well as abiotic problems — caused by factors such as temperature and moisture extremes, mechanical damage, chemicals,
nutrient deficiencies or excesses, salt damage and other environmental factors. Many plant problems, especially biotic problems, if not recognized and controlled early in their development, can result in significant economic damage for the producer. Therefore, timely and accurate diagnoses are required so that appropriate pest and disease
management options and other corrective measures can be implemented.
Definition of Plant Diagnosis and Steps
Diagnosis is the science and art of identifying the agent or cause of the problem under investigation. When one renders a diagnosis, one has collected all available information, clues and observations and then arrives at an informed conclusion as to the causal factor(s). Hence, plant problem diagnosis is an investigative, problem-solving process that involves the following steps:
- Ask and answer the appropriate questions to define the problem and
obtain information that is relevant to the case under investigation.
- Conduct a detailed, thorough examination of the plants and production areas.
- Use appropriate field diagnostic kits and lab tests to obtain clinical information on possible causal agents and factors.
- Compile all the collected information and consult additional resources and references.
- Finally, make an informed diagnosis.
Throughout this process compile all notes, observations, maps, laboratory results, photographs and other information. This compilation will be the information base for the present diagnosis and can also be a useful resource for future diagnostic cases. Keep an open mind as the information is analyzed and do not make unwarranted assumptions.
Distinguishing Abiotic and Biotic Problems
The first step is to determine whether the problem is caused by an infectious agent, and this can be difficult. Plant symptoms caused by biotic factors such as infectious diseases and arthropod pests are oftensimilar to damage caused by other factors. Leaf spots, chlorosis, blights, deformities, defoliation, wilting, stunting and plant death can
be common symptoms of both biotic and abiotic problems; therefore, the presence of these symptoms does not necessarily mean the problem is a disease. Some general guidelines for distinguishing abiotic and biotic
problems follow and are summarized in table 1.
Table 1 DISTINGUISHING ABIOTIC AND BIOTIC PROBLEMS |
||
Characteristics |
Abiotic |
Biotic |
Hosts |
often affects several species or plants of various ages |
often affects one species or cultivar of the same age |
Pattern of plant symptoms |
often related to environmental or physical factors or cultural practices; may be regular or uniform |
often initially observed in random or irregular locations |
Rate of symptom development |
relatively uniform, extent of damage appears similar among plants |
relatively uneven, time of appearance and damage severity varies among affected plants |
Signs |
no evidence of the kinds of pests or pathogens known to cause the current symptoms |
presence of insects, mites, |
Spread |
is not infectious, is not progressive, commonly caused by one incident and does not spread |
infectious, spreads on host over time if environmental conditions are suitable |
Recurrence |
possibly previously associated with current or prior environmental conditions or cultural practices |
possibly caused by pests that |
Adapted from Table 18, ANR Pub 3420 |
Biotic problems. Identifying biotic problems is sometimes facilitated if signs of a pathogen, primarily the growth of a fungus, are present. The most obvious examples of such signs are the mycelium and spores produced by rusts and powdery and downy mildews. However, in other cases nonpathogenic fungican grow on top of damaged plant tissues and appear to be signs of a pathogen, resulting in possible misdiagnoses.
Biotic problems often affect one species or cultivar of the same age and typically are initially observed in random or irregular locations; symptoms appear at varying times, and severity varies among affected plants. Biotic problems are infectious, spreading when environmental conditions are favorable, and may be associated with pests that have affected the crop. This infectious aspect is important, as biotic diseases will many times be progressive and continue to affect
additional tissues and more plants.
Abiotic problems. In contrast to biotic factors, abiotic problems often affect several species or plants of various ages; typically, damage is relatively uniform, doesn't spread and is often not progressive. Abiotic problems are not associated with pests. They are often caused by a single incident and are related to environmental or physical factors or cultural practices. Once the responsible factor has dissipated and is no longer affecting the plant, the plant may grow out of the problem and develop new, normal appearing foliage.
Diagnosing Biotic Problems
Infectious diseases. To confirm if a problem is caused by a pathogenic fungus, bacterium, nematode, or virus, it is often necessary to have symptomatic tissues analyzed by a trained horticulturalist or plant pathologist. Such experts will attempt to microscopically observe the agent and recover it, if culturable, through isolation procedures. Lab analysis is particularly important to determine if multiple pathogens are infecting the plant. A downside is that obtaining a diagnosis from lab analysis is not a fast process. However, quick test kits (fig. 1A) are available that can be used to rapidly identify many common diseases in the field.
A B
Fig.1. Diagnosing biotic
problems. Plant pathogens can sometimes be rapidly diagnosed using
commercially available quick tests, such as these test strips for
viruses (A). Arthropod pests such as Cuban laurel thrips (shown here on Ficus) cause feeding damage, which can help in pest identification (B). Photos: S.T. Koike (A), J. K. Clark (B).
It is worthwhile to emphasize that diagnosing plant diseases requirescareful examination of the entire plant specimen. Symptoms on leaves, stems, or other above ground plant parts might lead one to suspect that afoliar pathogen is involved. However, these symptoms could also resultif the roots are diseased. Therefore, it is important to conduct a
complete examination of the symptomatic plant.
Because biotic diseases are caused by living microorganisms, the collecting and handling of samples is particularly critical. Samples that are stored for too long a time after collecting or that are allowedto dry out or become hot (if left inside a vehicle, for example) will sometimes cause the pathogen in the sample to die, making pathogen recovery and identification impossible. Plants that have been diseased for a long time and that are in the late stages of disease development will often be colonized by nonpathogenic saprophytic organisms. If these tissues are collected, it will be difficult to recover the primarypathogen of concern because of the presence of these secondary decay organisms. Root samples should be collected carefully as diseased rootsare sometimes difficult to dig out of the potting mix or soil, are
usually colonized by the pathogen as well as secondary agents, and are very sensitive to high temperatures and drying conditions.
Arthropod and other invertebrate pests. Insects,mites, slugs and snails cause damage while feeding on the plant (fig. 1B). Feeding damage is usually associated by the type of feeding characteristics and mouthparts of the insect or pest. For example, mites and insects such as whiteflies, aphids and mealybugs have tubular sucking mouthparts that suck plant fluids, causing buds, leaves, or flowers to discolor, distort, wilt, or drop. Thrips have rasping mouthparts that result in dried out, bleached plant tissue. Caterpillars, weevils, snails and slugs have chewing mouthparts that
make holes and cuts in foliage or flowers. They can also prune plant parts and sometimes consume entire plants.
If present, these pests are visible with the naked eye, a 10 X hand lens, or stereomicroscope, all depending upon their size. An assessment of whether the identified arthropod or invertebrate matches the plant damage it is associated with must be determined. Sometimes the identified arthropod or invertebrate may not be the sole problem or
could, in fact, be a beneficial organism or insignificant pest.
Aphids, whiteflies, thrips, leafhoppers and some other insects that suck plant juices may vector pathogens such as viruses and phytoplasmas (and to a lesser extent fungi and bacteria). They can feed on infected plants, acquire the pathogen, feed on healthy host plants and transmit the pathogen to the new host. The insects do not necessarily have to bepresent in large numbers to cause a significant disease outbreak. The insect vectors are not always present at the same time the disease symptoms are being expressed.
The excrement and byproducts from these pests can also provide clues that the pests have been or are actively present. Caterpillars and other chewing pests produce dark excrement or droppings. Greenhouse thrips and plant bugs produce dark, watery, or varnish-like droppings onfoliage. Aphids, whiteflies, soft scales, and some other sap-sucking insects excrete excess plant fluids as honeydew, a sticky sap, which provides a medium for the growth of sooty mold.
Diagnosing Abiotic Problems
Nutrient deficiencies and toxicities. Nutrientdeficiencies and toxicities reduce shoot growth and leaf size, cause leaf chlorosis (fig.2A), necrosis and dieback of plant parts. However, nutrient deficiencies cannot be reliably diagnosed on the basis of symptoms alone because numerous other plant problems can produce similarsymptoms. There are general symptoms that can be expressed by deficiencies of nutrients but usually leaf and/or soil samples are
needed to confirm the problem.
A B
Fig. 2. Examples of abiotic problems. Iron deficiency on sweet gum (Liquidambar styracifolia) showing interveinal chlorosis (A). Chorotic spots on Hedera caused by a miticide application at a higher dosage rate than specified on the pesticide label (B). Photos: E. Martin (A), S. A. Tjosvold (B).
Herbicide, insecticide and fungicide phytotoxicity. Herbicidesused to control weeds in crops or in non-cropped areas sometimes injureornamental crops when they are not used in accordance with label instructions. Examples include when an herbicide is used in or around sensitive non-target crops, when an herbicide rate is increased above tolerable limits, or when an applicator makes a careless application. By understanding the mode of action of the herbicide, one can determine if the symptom fits an herbicide application. Herbicide detection in affected plants is possible with the help of a specialized laboratory but the analysis can be expensive. To minimize the cost of testing, the laboratory will need to know the suspected herbicide or its chemical group to narrow the analysis. Pesticides and fungicides occasionally cause obvious plant damage.
Symptoms can vary widely. Generally, flower petals are more susceptible to damage from pesticide applications than are leaves. The younger and more tender the leaves the more susceptible they are to pesticide applications. Hot weather can exacerbate the damage the chemicals cause. Pesticides that have systemic action can have a more profound effect. Some active ingredients can adversely affect the photosynthetic mechanism or other physiological processes and can resulti n a general leaf chlorosis, interveinal chlorosis, leaf curling and stunting. Emulsifiable concentrate (EC) formulations, soaps and oils can adversely affect the waxy surface layer that protects the leaf from desiccation. Applications with these products can result in the loss ofthe shiny appearance of a leaf, leaf spotting and necrosis. Pesticidesapplied as soil drenches can cause poor germination, seedling death, or
distorted plant growth.
Check label precautions against use on certain species. Make sure thepesticide is not applied more frequently or at a higher rate (fig. 2B) than recommended, or that the pesticide is not mixed with incompatible pesticides. When in doubt as to whether the plant species is sensitive to the pesticide, spray a few plants and observe them for several days to a week for any signs of damage before spraying any more of the plants.
Physiological and Genetic Disorders
There are numerous disorders that can occur because of environmental extremes — too much or too little of an environmental element such as light, temperature, water, or wind. Sunburn is damage to foliage and other herbaceous plant parts caused by a combination of too much light and heat and insufficient moisture. A yellow or brown area develops on foliage, which then dies beginning in areas between the veins. Sunscaldis damage to bark caused by excessive light or heat. Damaged bark becomes cracked and sunken. Frost damage causes shoots, buds and
flowers to curl, turn brown or black and die. Hailstones injure leaves,twigs, and in serious cases even the bark. Chilling damage in sensitive plants can cause wilting of foliage and flowers and development of dark water-soaked spots on leaves that can eventually turn light brown or bleached, and die. Physical and mechanical injury can occur when plants are mishandled during transport or routine cultural practices. Wounds might serve as entry sites for plant pathogens and can attract boring insects to woody stems.
In closed environments such as greenhouses and nursery storage areas,plants can be exposed to toxic levels of ethylene gas. Sources of ethylene include improperly functioning or unvented greenhouse heaters; exhaust from engines of forklifts and vehicles; cigarette smoke; damaged, decaying, or dying plants; and ripe or decaying fruit. Toxic levels of ethylene gas can cause premature abscission of flower buds, petals (fig. 3) and leaves. Other symptoms include wilted flowers, chlorosis, twisted growth or downward bending of stems and leaves and undersized or narrow leaves.
A B
Fig. 3. Poor air quality can
lead to physiological disorders. Shattering (petal drop) on geranium was
caused by plant exposure to low levels of ethylene in the greenhouse or
during postharvest storage (A). Yellowish and brownish patches on
Japanese maple leaves are damage caused by ozone (B), an outdoor air
pollutant. Photos: J. K. Clark.
Outdoors, exposure of nursery plants to air pollutant gases such as ozone (fig. 3), carbon monoxide, nitrous oxides and sulfur dioxide can cause damage. Typical symptoms vary widely, but include slow growth anddiscolored, dying, or prematurely dropping foliage. Damage is often found where plants are located near sources of polluted air such as near
freeways or industries or where weather and topography concentrate the pollutants.
Sometimes plants or plant shoots exhibit an unusual and sudden changeof color producing discrete markings of variegation. For example, a plant with entirely green leaves suddenly produces a shoot that has leaves with edges lacking green pigment, stripes, or blotches. A new shoot such as this is probably a chimera (fig. 4). It is produced when a genetic mutation occurs in a specific region of the growing tip resulting in a section with genetically different cells. The ostensible result of the genetic change is dependent on the arrangement of the genetically different cells in the shoot tip and their expression. This can lead to sometimes bizarre variegation forms or sometimes forms thatare quite desirable. Sometimes variegation can be caused by viruses. Viruses usually cause non-uniform chlorosis, such as mosaics, while
chimeras usually produce patterned forms such as variegation of color onleaf margins, stripes, or complete loss of pigment. Some viroids may also cause bleaching of pigments in leaves; such symptoms, however, are generally produced throughout the plant and are not restricted to a single shoot. Some nutrient disorders can cause variegation but these disorders usually do not arise from a specific shoot as with chimeras.
Fig. 4. Genetic disorder.
Growing points with variegated leaves can sometimes arise spontaneously
from some species such as this Origanum. Genetic variants such as this are sometimes confused with plants with virus disease or nutrient deficiency symptoms. Photo: S. A. Tjosvold.
Steve Tjosvold is Environmental Horticulture Advisor and
Steve Koike is Plant Pathology Farm Advisor, UC Cooperative Extension,
Santa Cruz and Monterey counties.
This article was condensed from: Diagnosing Plant
Problems, Chapter 11. In Newman, J. (ed) Container Nursery Production
and Business Management. Univ. of Calif. Agric. and Nat. Resources.
Publication 3540. Richmond, CA.
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195021.
- Author: Ben Faber
A tensiometer is one of the most wonderful devices for figuring out when to water plants. It works equally well in orchard and garden situations. It follows the soil moisture content as it is depleted by the plant and will tell you when it is time to rewet the root zone. If, you monitor it faithfully. If you don't, it can give erroneous results. If you are not watching it, it can go dry and give a false reading. That should only tell you the reader to pay more attention to the plant's water needs.
It's actually very reliable if it is installed correctly. And once it is and maintained it can give good results for years.
Here is a video showing Gary Bender installing a tensiometer correctly.
http://ucanr.edu/sites/alternativefruits/?story=1743
Of course there are many ways to monitor soil moisture and the water needs of plants. A shovel, auger or trowel are incredibly accurate devices if you get down and dirty. The tensiometer allows you to stay clean, at least for soil moisture monitoring.
- Author: Ben Faber
This is a reminder of the complexity of huanglongbing and the bacterial infection it causes. This abstract is from the HLB Conference in Florida last fall.
4.a.5 Symptom variations and molecular markers that illustrate the HLB complexity
Yongping Duan, Marco Pitino, and Cheryl Armstrong
USHRL-ARS-USDA, Fort Pierce, FL 34945, USA
Huanglongbing (HLB) is a devastating bacterial disease of citrus worldwide due to its intracellular and systemic infection. Various HLB symptoms are observed on different species/varieties of citrus plants: from yellow shoots to blotchy mottle on the leaves, from vein yellowing/vein corky to mosaic/green islands similar to zinc deficiency on the leaves, from whitish discoloration to stunted green leaves, etc. These variations of symptoms, which result from a combination of biotic and abiotic stresses, are not only present on individual plants from a variety but also exist on individual branches of an infected plant. Our results indicated that the adaptation of the bacterial populations, such as the dynamics of ‘Candidatus Liberibacter asiaticus' (Las), plays an important role in the induction of various symptoms and that Las mutations as well as the number and recombination events of Las prophages/phages affect this phenomenon. In addition, the selection of the host plants (resistance/tolerance) for the bacterial populations is also critical for symptom expression during disease progression. Based on severity, we divided HLB symptoms into four grades. It is worth noting that the grades of HLB symptom severity show a positive correlation with our newly identified biomarkers from host plants, and that gene expression profiling of different grades of infected leaves rationalized the differentiation based on the dynamics of these biomarkers. Because of these findings, we propose new approaches that allow for rapid selection of variant citrus plants, including bud sports with greater HLB resistance/tolerance.
Non-Technical Summary: Various symptoms of citrus huanglongbing display in different species/varieties of infected citrus plants. These variations of symptoms are not only present on individual plants from a variety, but also exist on individual branches of an infected plant. We have identified some molecular markers from the citrus plants and Las pathogen that illustrate the HLB complexity. Therefore, we propose new approaches that allow for rapid selection of variant citrus plants, including bud sports with greater HLB resistance/tolerance.
http://www.icc2016.com/images/icc2016/downloads/Abstract_Book_ICC_2016.pdf
- Author: Ben Faber
A call from a small grower, surprised at the sudden decline of the avocado trees. It must be a disease was the grower's thought. Well driving up to the site, there were numerous trees with canopies indicating drought stress. In fact most of the trees looked like they had had the water turned off. When I got to the orchard, all the trees had a similar look (see photo below). The fringe of the canopy had turned brown/red where the leaves had collapsed rapidly, while the interior leaves were often still green. All the trees had a similar cast. It turns out the water district had required a cutback just when temperatures were going into the 100's. NO water, no cooling effect of transpiration and the outer fringe of leaves collapsed. This is called the “clothesline” effect. It's like a sheet on a clothesline where the margins of the sheet dry first and gradually the body of the sheet dries. The same thing happens in a canopy. The outside leaves are the first to dry out and then the rest of the canopy goes. When you see a whole orchard go down suddenly, that does not fit into a disease pattern. There's usually an epicenter where it starts – where it's colder, wetter, dryer, hotter, more overgrown, etc. and spreads out from there if it is going to spread. It turns out that the automatic irrigation system had gone down and the grower hadn't noticed until too late. When you see reddish tinged leaves, it means the leaves went down fast. When they are brown, it means they slowly went down over weeks or months.
With all the dead points in the tree, it is now open to disease – twig/leaf blight caused by one of the Botryosphaerias. These decay fungi are everywhere in an orchard decaying organic material on the orchard floor. With the dead material in the tree, now the tree becomes a potential feast for the fungi. The dead stuff has to come out, or the fungus will start eating into the tree. I suggested that instead of pruning out all those little points of death, that they cut back the whole canopy to major scaffold branches. In doing so, it would rapidly and cheaply remove the dead material and reduce the water demand.
- Author: Tim Spann, CA Avocado Commission
Avocado Heat Advisory Temperatures are forecast to be in the triple digit range throughout much of the southern California avocado growing region beginning Sunday June 19 and extending into Tuesday June 21. The National Weather Service (NWS) is predicting maximum temperatures between 100 and 110 degrees with similar heat index readings away from the immediate coast for Ventura and Los Angeles Counties. In Riverside, San Diego and Orange Counties, NWS predictions are for 95 to 105 degrees in the valleys, and 105 to 113 degrees in the inland empire and high desert.
To ensure that California avocados maintain their superior quality it is imperative that growers manage their trees and harvest their fruit according to the best management practices as outlined below.
IRRIGATION Growers should be irrigating their trees now, in advance of the heat, to ensure that their trees are fully hydrated. An additional 50% of the budgeted amount of water is recommended to be applied the day before a heat wave. For extended heat waves, daily pulses of irrigation are recommended to maintain the trees' water status. A well-watered tree will tolerate the stress of a heat wave much better than a tree that is suffering from water stress. Signs of heat damage to trees include fruit drop, shoot damage, leaf burn and in severe cases leaf drop.
HARVESTING Every attempt should be made to harvest fruit when temperatures are below 90 °F, and no harvesting should take place when temperatures exceed 95 °F. Temperature in the shade should be monitored during harvesting and, when possible, harvesting crews should be moved to the coolest, least exposed areas of the grove.
Field bins should be placed under the trees while being filled to protect the harvested fruit from sunburn. Once filled, bins should be moved to a shade structure (open-sided roofed building), or covered with bin covers or light-colored tarps if they cannot be immediately transported to the packinghouse. Never leave filled bins exposed to the direct sun. The surface layer of fruit can easily heat up to more than 15 °F above ambient temperature when exposed to direct sun. Acute sunburn will only show on fruit after it is packed and is a major quality detractor.
To avoid water loss and decreased fruit quality do not hold fruit too long after harvest. Transport fruit to the packinghouse at least once per day, if not twice daily. Bins should not be left in the grove for more than 8 hours after harvest. Cover bins during transport to avoid sunburn and to reduce water loss.
Photos: Leaf sunburn, fruit sunburn