Doctoral student Ching-Jung Lin of the laboratory of nematologist Shahid Siddique, associate professor, UC Davis Department of Entomology and Nematology, is the recipient of a two-year, $32,000 Ministry of Education Taiwan Government Scholarship to Study Abroad (GSSA).
The scholarships are awarded to young Taiwanese doctoral students in various fields to support their research.
Lin enrolled in the UC Davis plant pathology doctoral program, with a designated emphasis in biotechnology, in 2020. In the Siddique lab, she is working on nematode transformation and nematode-induced plant immunity.
Lin received her bachelor's degree in agronomy in 2015 from the National Chung Hsing University, Taichung, Taiwan, and her master's degree in plant biology in 2018 from National Taiwan University, Taipei, Taiwan. Her master's research, in the lab of Chiu-Ping Cheng, involved the study of tomato innate immunity mediated by bacterial-wilt-associated QTL (quantitative trait locus) genes. Before joining the Siddique lab, she was a research assistant in the lab of Erh-Min Lai of Academic Sinica, where she studied Agrobacterium-triggered immunity in Arabidopsis.
“I am fascinated by plant-microbe interaction,” Lin says. ‘Currently I am interested in the development of functional genetic tools in plant-parasitic nematodes and the characterization of nematode-induced plant immunity.
A frequent presenter at conferences, Lin presented her research at the 2023 Bay Area Worm meeting at UC Davis; the 2019 International Society for Molecular Plant-Microbe Interactions (IS-MPMI) Congress in Glasgow, and at several Taiwanese conferences. She will compete in a 12-minute presentation competition at the 62nd annual Society of Nematologists' meeting, to be held July 9-14 at The Ohio State University, Columbus. She received a $600 Bayer Crop Science Student Travel Award to attend the conference.
Lin also presented at the 2019 at International Society for Molecular Plant-Microbe Interactions (IS-MPMI) Congress in Glasgow, and at several Taiwanese conferences.
Plant-parasitic nematodes are destructive pests causing losses of billions of dollars annually. Siddique says the research in his lab “focuses on elucidating interactions between plant parasitic nematodes and their hosts using molecular and applied methodologies.”
Sales, on track to receive his bachelor's degree in biotechnology (with an emphasis on plant biotechnology) in June 2022, submitted his successful research application on “Toward a More Resistant Plant: Uncovering Plant Host Targets of Novel Plant Parasitic Nematode Effectors.” He is one of only four students to be awarded the summer fellowship.
“Ado is a highly gifted student with a strong interest in agriculture and plant biology,” said Siddique. “I have really enjoyed one-on-one interaction with Ado and I have observed him growing academically and intellectually. He has a level of maturity in his research, including contributing ideas for troubleshooting, that I had no hesitations about giving him the space to continue his project independently. The IIFH fellowship program will add to his personal and professional growth and contribute to the experience of first-generation immigrant students like himself.”
ILFH awards Undergraduate Research Center Fellowships (URC-IIFH) to faculty-guided undergraduate students who perform research related to food, agriculture and health. Each fellow receives a summer research stipend, and funds for travel and/or research supplies. The fellows also will participate in professional development and entrepreneurship training, including the on-campus Entrepreneurship Academy. They will present their research results at the annual IIFH Innovator Summit in spring 2022, with opportunities to participate in the UC Davis Little Bang poster competition and the Big Bang competition.
His research involves RNA extraction, cDNA synthesis, Polymerase Chain Reaction (PCR), and gel electrophoresis, as well as GreenGate Cloning of plant parasitic nematodes genes. His skills also include seed germination and nematode hatching for plant-nematode assays, and the microscopic evaluation of nematode damage on plants.
Sales' journey to the Siddique lab began in May 2019 when he was selected a research scholar in the campuswide program, Research Scholar in Insect Biology (RSPIB), launched by UC Davis Entomology and Nematology faculty Jay Rosenheim, Joanna Chiu and Louie Yang to provide undergraduates with a closely-mentored research experience in biology. Students join in their first or second year and are placed in a faculty mentor's laboratory where they receive ongoing training and career guidance in research and scientific writing. They also learn how to present their research results at professional scientific meetings and to prepare applications for graduate or professional schools.
When Sales learned that Rosenheim, a UC Davis distinguished professor of entomology, also co-leads RSPIB, “I knew that I should apply to this program to gain more research experience and valuable connections with professors in campus.”
Sales said he chose the Siddique lab because “I found his research impactful, engaging, and unique. As someone who has always been fascinated by agriculture and plant biotechnology, I found plant parasitic nematode research as an important field of research that is underestimated and unexplored. I wanted to be part of this research because I think I would have more room to grow as a researcher and a student.”
He initially worked in the Siddique lab with postdoctoral researcher Henok Yimer. “At first, I had zero lab experience and knowledge, so I had to be intentional and attentive when it came to following lab procedures and lab experiments such as PCR or gel electrophoresis. Gradually, I became familiar with the basic assays and techniques and when Fall 2020 came, I was given my very first independent research. My research involved the identification of plant host targets of plant parasitic nematode effector proteins using cloning and microscopy techniques.”
With assistance from Siddique, Sales learned of the URC-IIFH summer fellowship and submitted a research summary, innovation statement, and letters of recommendation. An interview followed. “I was fortunate to be awarded this fellowship,” he said, “and continue my research in Dr. Siddique's lab to learn and do competent research.”
Born and raised in Manila, the Philippines, Sales moved to the United States as a teen and is a graduate of Dougherty Valley High School, San Ramon. He serves as a student intern at the UC Davis Bulosan Center for Filipino Studies to help preserve the oral history of Filipino-Americans in the Greater Sacramento Area.
He is also vice president of the UC Davis French Club; a member of the Pilipinx Americans in Science and Engineering; and the UC Davis representative to the Cornell Institute for Digital Agriculture Hackathon, which explores what technology can do for agriculture.
The nine-member research team, led by Frank Schroeder, a BTI professor and also a professor in Cornell University's Department of Chemistry and Chemical Biology, detailed how plants speak “roundworm language” for self-defense. The work is published Jan. 10 in the journal Nature Communications.
The researchers studied chemicals called ascarosides, which the worms produce and secrete to communicate with each other. Williamson helped analyze the data and helped make some key insights toward the paper's conclusions, the BTI scientists related.
The team found that plants “talk” to nematodes by metabolizing ascarosides and secreting the metabolites back into the soil.
“It's not only that the plant can ‘sense' or ‘smell' a nematode,” Schroeder said in a BTI news release. “It's that the plant learns a foreign language, and then broadcasts something in that language to spread propaganda that ‘this is a bad place.' Plants mess with nematodes' communications system to drive them away.”
The study built on the team's previous work showing that plants react to ascr#18 – the predominant ascaroside secreted by plant-infecting nematodes – by bolstering their own immune defenses, thereby protecting them against many types of pests and pathogens.
In those earlier studies, “We also saw that when ascr#18 was given to plants, the chemical disappears over time,” according to lead author Murli Manohar, a senior research associate at BTI.
That observation, along with published literature suggesting plants could modify pest metabolites, led the team to hypothesize that “plants and nematodes interact via small molecule signaling and alter one another's messages,” Schroeder said.
To probe that idea, the team treated three plant species – Arabidopsis, wheat and tomato – with ascr#18 and compared compounds found in treated and untreated plants. They identified three ascr#18 metabolites, the most abundant of which was ascr#9.
The researchers also found Arabidopsis and tomato roots secreted the three metabolites into the soil, and that a mixture of 90% ascr#9 and 10% ascr#18 added to the soil steered nematodes away from the plant's roots, thereby reducing infection.
The team hypothesized that nematodes in the soil perceive the mixture as a signal, sent by plants already infected with nematodes, to “go away” and prevent overpopulation of a single plant. Worms may have evolved to hijack plant metabolism to send this signal. Plants, in turn, may have evolved to tamper with the signal to appear as heavily infected as possible, thereby fooling would-be invaders.
“This is a dimension of their relationship that no one has seen before,” said Manohar. “And plants may have similar types of chemical communication with other pests.”
Although the mixture of ascr#9 and ascr#18 could serve as a crop protectant, Schroeder said there should be no detriment to using straight ascr#18 on crops, as described in the team's earlier research.
“Ascr#18 mainly primes the plant to respond more quickly and strongly to a pathogen, rather than fully inducing the defensive response itself,” he said. “So there should be no cost to the plant in terms of reduced growth, yield or other problems.”
The team also showed that plants metabolize ascr#18 via the peroxisomal β-oxidation pathway, a system conserved across many plant species.
“This paper uncovers an ancient interaction,” Schroeder said. “All nematodes make ascarosides, and plants have had millions of years to learn how to manipulate these molecules.”
He added: “Plants aren't passive green things. They are active participants in an interactive dialog with the surrounding environment, and we will continue to decipher this dialog.”
These discoveries are being commercialized by a BTI and Cornell University-based startup company, Ascribe Bioscience, as a family of crop protection products named PhytalixTM.
Scientists affiliated with four institutions--BTI, Cornell, UC Davis and the USDA's Robert W. Holley Center for Agriculture and Health--co-authored the paper. Grants from USDA and the National Institutes of Health funded the research.
Ella Mae Noffsinger, 84, who retired in 1991 as the senior museum scientist in charge of the UC Davis Nematode Collection, passed away March 22, 2018 in Woodland. She was a longtime resident of Palm Gardens Assisted Living, Woodland.
Noffsinger was instrumental in the development of the nematode collection, and collaborated with many nematologists in the description of species, said Steve Nadler, professor and chair of the UC Davis Department of Entomology and Nematology. Active in the Society of Nematologists (SOM) when few women were participating, she served on the SOM executive board and as the editor of the Nematology Newsletter, as well as numerous other committees.
During her career, her research and work took her from Colorado to Wisconsin to Chile: from the Beet Sugar Development Foundation in Fort Collins, to the University of Wisconsin, in Madison, and to Santiago, Chile, from 1967 to 1969. She worked with UC Davis nematologist M. W. Allen for many years.
A native of Center, Colo., she was born into the rural ranching family of Doc and Ruth Noffsinger on March 15, 1934. She received her bachelor's degree at what is now Colorado State University, and her master's degree in 1958 from California State University in zoology.
After retiring, she spent most of her time along the coast of Brookings, Ore., enjoying fishing, and other coastal pursuits. She is preceded in death by her parents and brothers. Survivors include her many nieces and nephews, as well as her close friends in the Woodland and Davis area.
Memorial donations may be made to the Salvation Army, "or the charity of your choice," her family indicated.
History of Nematology at UC Davis
DAVIS--Crowds will "explore the diversity of life" at 13 museums or collections during the seventh annual UC Davis Biodiversity Museum Day on Saturday, Feb. 17. The event, set from 9 a.m. to 4 p.m. is free and open to the public.
Displays will range from ancient dinosaur bones to live praying mantises, from hawks to honey bees and from California condor specimens to carnivorous plants. Last year's Biodiversity Museum Day drew more than 4000 visitors to campus.
This is a family friendly, science-based event, said Biodiversity Museum Day chair Tabatha Yang, education and outreach coordinator for the Bohart Museum of Entomology. All 13 museums or collections are within walking distance on campus except for the Häagen-Dazs Honey Bee Haven on Bee Biology Road and the Raptor Center on Old Davis Road. Openings vary from 9 a.m. to 1 p.m. and from noon to 4 p.m.
The following will be open from 9 a.m. to 1 p.m.:
- Arboretum and Public Garden, Good Life Garden, next to the Robert Mondavi Wine and Food Science Institute, 392 Old Davis Road, on campus
- Bohart Museum of Entomology, Room 1124 of the Academic Surge Building, Crocker Lane
- California Raptor Center, 340 Equine Lane, off Old Davis Road
- Museum of Wildlife and Fish Biology, Room 1394, Academic Surge Building, Crocker Lane
- Paleontology Collection, Earth and Physical Sciences Building, 434 LaRue Road
- Phaff Yeast Culture Collection, Robert Mondavi Institute of Wine and Food Science, 392 Old Davis Road, on campus
- Viticulture and Enology Culture Collection, Robert Mondavi Institute of Wine and Food Science, 392 Old Davis Road, on campus
The following will be open from noon to 4 p.m.:
- Anthropology Museum, 328 Young Hall and grounds
- Design Museum, 124 Cruess Hall, off California Avenue
- Botanical Conservatory, Greenhouses along Kleiber Hall Drive
- Center for Plant Diversity, Sciences Laboratory Building, off Kleiber Hall Drive
- Häagen-Dazs Honey Bee Haven, Bee Biology Road, off Hopkins Road (take West Hutchison Drive to Hopkins)
- Nematode Collection, Sciences Laboratory Building, off Kleiber Hall Drive
All participating museums and collections have active education and outreach programs, Yang said, but the collections are not always accessible to the public. In the event of rain, alternative locations are planned for the outdoor sites. Maps, signs and guides will be available at all the collections, online, and on social media, including Facebook and Twitter, @BioDivDay.
Capsule information about each museum or collection:
The Arboretum and Public Garden display will be from 9 a.m. to 1 p.m. at the Good Life Garden, next to the Robert Mondavi Wine and Food Science Institute, 392 Old Davis Road, on campus. It will join two other collections: Phaff Yeast and Viticulture and Enology. The Arboretum activities will be interactive; Learning-by-Leading Students are creating the content that will be featured on the day of Biodiversity Day. Coordinator: Melissa Cruz, outreach and leadership program coordinator.
Bohart Museum of Entomology
The Bohart Museum of Entomology will be open from 9 a.m. to noon in Room 1124 of the Academic Surge Building on Crocker Lane, off LaRue Road. The Bohart is the home of a global collection of nearly 8 million insect specimens. Highlights will include the 500,000-specimen butterfly/moth collection, curated by entomologist Jeff Smith; display of praying mantises, including orchid mantises, by UC Davis entomology student Lohit Garikipati; and a Belize insect collection display by Smith and fellow Bohart Museum associates Fran Keller and Dave Wyatt from their latest expedition. "You'll be able to see the tremendous diversity of butterflies, moths and mantids, and talk to the scientists who have just returned from there," said Tabatha Yang, education and outreach coordinator. "There will be orchids and orchid bees connecting the Bohart Museum's work with plant biology and science."
California Raptor Center
The California Raptor Center on 1340 Equine Lane, Davis, just off Old Davis Road, will be open from 9 a.m. to 1 p.m. A living collection of non-releasable raptors will be on exhibit. The center's educational ambassador birds will be out "on the fist" in the fenced yard by the museum, so visitors can get a close look at wild raptors while talking to the volunteers and learning about the magnificent birds of prey that live in this area, said Julie Cotton, volunteer and outreach coordinator. The on-site museum, recently renovated, features redesigned exhibits and a new touch-screen display. Coordinator: Julie Cotton, volunteer and outreach coordinator.
Museum of Wildlife and Fish Biology
The Museum of Wildlife and Fish Biology, in Room 1394 of the Academic Surge Building, Crocker Lane (off LaRue Road) will be open from 9 a.m. to 1 p.m. Visitors can view the bird and mammal museum specimen taxidermy demonstrations; explore the research collections with museum docents; see the newly acquired California condors on display, and see other specimens on display, including Papua New Guinea birds and mammals, reptiles and amphibians, primates and marine fishes. Note that strollers are not allowed in classroom or museum, they can be parked them under adjacent stairwell. Visitors are also asked to wash their hands before entering museum. Coordinator: Andrew Engilis Jr., director.
The Paleobiology Collection will be open from 9 a.m. to 1 p.m. in the Earth and Physical Sciences Building, 434 LaRue Road. Visitors can view fossil specimens dating from as old as 550 million years ago to more recent animal skeletons. Paleontology graduate students in invertebrate and vertebrate paleontology will answer questions and provide interesting factoids. Coordinator: Mark Deblois, Department of Earth and Planetary Sciences.
Phaff Yeast Culture Collection and Viticulture and Enology Culture Collection
These collections will be open from 9 a.m. to 1 p.m. in the Robert Mondavi Institute for Wine and Food Science, 392 Old Davis Road, on campus. Visitors can learn about the importance of microbes in research, biotechnology, and food and beverages, and about the proud history of two of the world's prominent microbe collections. The Phaff Yeast Culture Collection is part of the Department of Food Science and Technology department, and the Viticulture and Enology Culture Collection is part of the Department of Viticulture and Enology. Visitors can see and smell dozens of yeast species, learn how yeasts and bacteria are important for making fermented foods and beverages (even clothes can be made from microbes), taste vegemite, marmite and kombucha tea; learn about cutting edge research using these microbe collections; and tour the UC Davis teaching winery and brewery.
The microbe collection activities will be in the Robert Mondavi Institute Brewery, Winery and Food Processing building, which is in the southwest area of the complex of orange buildings at Old Davis Road and Hilgard Lane. Coordinators: Kyria Boundy-Mills, Phaff collection curator and specialist, Food Science and Technology, and Lucy Joseph, Viticulture and Enology collection curator and senior museum scientist.
The Department of Anthropology Museum in 328 Young Hall will be open from noon to 4 p.m. The Anthropology Museum curates collections of archaeological, ethnographic, biological and archival materials. The theme is "Year of the Dog" and there will be a scavenger hunt for kids to find all the hidden dogs in the exhibits, and people can test their skills as an ancient hunter and toss an atlatl dart or learn to make a tool from volcanic stone, says zooarchaeologist Christyann Darwent. The Anthropology Museum curates collections of archaeological, ethnographic, biological and archival materials. The museum maintains a teaching collection that includes casts and reproductions of artifacts from a variety of prehistoric human groups. Coordinator: Christyann Darwent, associate professor.
The Design Museum will be open from noon to 4 p.m. in Room 124 of Cruess Hall. Professor Timothy McNeil and curator Adrienne McGraw will staff the exhibit, It's Bugged: Insects' Role in Design, which explores the connections between people and insects. This is a special opening just for Biodiversity Museum Day. (The exhibit opened Jan. 8 and continues through April 22; regular hours are weekdays from noon to 4 p.m. and Sundays from 2 to 4 p.m.) "It's Bugged" includes art from hornet nest paper; beetle-gallery sculptures, and insect-themed clothing from the Department of Design faculty and graduate students; and insect specimens from the Bohart Museum of Entomology and insect photos from UC Davis alumnus Alex Wild, curator of entomology at the University of Texas, Austin. Coordinators: Timothy McNeil, professor, and Adrienne McGraw, exhibition curator.
The Botanical Conservatory
The Botanical Conservatory, greenhouses on Kleiber Hall Drive, will be open from noon to 4 p.m. Visitors can expect a multi-sensory experience of a plethora of plants primarily from the tropical and subtropical biomes. Featured plants and displays include the always popular carnivorous plants, fruiting specimens of Chocolate (Theobroma) and Coffee (Coffea), various Amorphophallus species at various stages of leaf and possibly flowering individuals, an assortment of cacti, succulents and other desert dwellers, and finally an assortment of winter blooming South African Bulbs to further entice the senses. Coordinator: Ernesto Sandoval, collections manager.
Center for Plant Diversity Herbarium
The Center for Plant Diversity Herbarium, open from noon to 4 p.m. in Room 1026 of the Sciences Laboratory Building, central campus (off Kleiber Hall Drive), will exhibit Hmong medicinal and culinary herbs. Viewers can view and identify plants under the microscope and watch plant pressing and mounting demonstrations. A kids' area activity will include pressed plants/glue/paper. Coordinator: Ellen Dean, curator.
Häagen-Dazs Honey Bee Haven
Häagen-Dazs Honey Bee Haven, a half-acre bee demonstration garden next to the Harry H. Laidlaw Jr. Honey Bee Research Facility, Bee Biology Road, will be open from noon to 4 p.m. Activities include catch-and-release bee viewing and making "Feed the Bees" seed cookies. The haven was installed in the fall of 2009. A six-foot-long bee sculpture, Miss Beehaven, by artist Donna Billick, co-founder and co-director of the UC Davis Art/Science Fusion Program, anchors the haven. Other art, coordinated by entomology professor Diana Ullman, co-founder and director of the Art/Science Fusion Program, and Billick, also graces the haven. Guests will see bee condos occupied by leafcutter bees and mason bees. Robbin Thorp, distinguished emeritus professor of entomology, has recorded more than 80 different species of bees in the garden. Coordinator: Christine Casey, academic program management officer.
The nematode collection will open from noon to 4 p.m. in the Science Laboratory Building, central campus (off Kleiber Hall Drive). Visitors can expect to see live and preserved nematode specimens. Highlights include the huge jars of whale intestinal worms. Nematodes, also called worms, are elongated cylindrical worms parasitic in animals or plants or free-living in soil or water. They exist in almost every known environment. The many different species eat everything from bacteria and fungi to plant and animal tissue. Coordinator: Corwin Parker, nematology doctoral student.
For further information about the Biodiversity Day, access the UC Davis Biodiversity Museum Day website.