- Author: Kathy Keatley Garvey
Alison Coomer, Pallavi Shakya and Ching-Jung Lin are among the record 18 students given travel awards by SON, thanks to industry sponsors. All travel award recipients will deliver a presentation or provide a poster at the international meeting.
Bayer Crop Science will sponsor 10 travel awards, and Microbes, Inc., Certis Biologicals and Corteva, will each sponsor two awards. In addition, the United Soybean Board will provide two travel awards to students presenting nematode research in soybean production.
Alison Coomer
Alison, a third-year graduate student in the Department of Plant Pathology, is focusing her research on plant parasitic nematodes, specifically root-knot nematodes, and their molecular mechanisms to defend against plant immune systems. "I am also working to gain more understanding in the defense mechanism in plants towards plant parasitic nematodes."
Alison, originally from the St. Louis, Mo., region, received two undergraduate degrees from Concordia University, Neb.: a bachelor's degree in biology and a bachelor's degree in chemistry.
"I am very thankful to Cobb Foundation and Mai-Ferries-Bird for receiving one of the most prestigious student awards: Cobb Foundation/Mai-Ferris-Bird Student Travel Award," she said.
In her leisure time, Alison enjoys "the outdoors, animals of all varieties, and serving my community."
Pallavi Shakya
Pallavi is a second-year doctoral student in Siddique lab. "I come from Nepal, the land of Himalayas and I am interested in exploring plant parasitic nematodes from a combination of plant pathology and bioinformatics viewpointism," she related. Pallavi received her master's degree in plant biotechnology from Wageningen University in the Netherlands where she was introduced to transcriptomics of potato cyst nematodes.
"Working with these nematodes showed me the importance of understanding plants along with the parasites they have co-evolved with," she said. "In the Siddique lab, I plan to learn about the genomics and transcriptomics aspects of plant-nematode interaction."
"I am very thankful to Bayer Crop Science for my student travel award, and I am looking forward to meeting all the amazing nematologists in the meeting."
Ching-Jung Lin
Ching-Jung is a doctoral student in the Department of Plant Pathology with a designated emphasis in biotechnology. "I am fascinated by plant-microbe interaction," she said. "Currently I am interested in the development of functional genetic tools in plant-parasitic nematodes and the characterization of nematode-induced plant immunity. Originally from Taiwan, she holds a bachelor of science degree in agronomy from National Chung-Hsing University, and a master's degree in plant biology from National Taiwan University.
"I am very thankful to Bayer Crop Science for funding my student award and I look forward to delivering my presentation at the SON conference," she said. Outside of the lab, Ching-Jung enjoys "reading, jogging, playing badminton, and going to the gym." And, she added, "I am a coffee and dog person."
Research in Shahid Siddique Lab
Research in the Siddique lab focuses on basic as well as applied aspects of interaction between parasitic nematodes and their host plants. "The long-term object of our research," he says, "is not only to enhance our understanding of molecular aspects of plant–nematode interaction but also to use this knowledge to provide new resources for reducing the impact of nematodes on crop plants in California."
SON is an international organization formed to advance the science of nematology in both its fundamental and economic aspects.
"Nematodes are the most abundant multicellular animals on the face of the earth," SON relates on its website. "They occur literally everywhere--in soil and decaying matter from the poles to the tropics, in all forms of plant life, in the bodies of almost all animals, including humans, and in insects. Living in such diverse environments as the sand and mud of the ocean bottom, stony mountain soils, and arid polar deserts are thousands to millions of nematodes per square meter."
SON defintes nematodes as "nonsegmented roundworms with complete sensory, digestive, excretory, and reproductive systems. Most, but not all, are microscopic. The variety of nematode forms and habitats is almost unbelievable: they range from the minute inhabitant of your favorite mushroom to the 27-foot-long parasite in the placenta of a sperm whale."
"Nematodes are essential elements of ecosystems, but most have no direct effect on humans," the SON website points out. "Those that do, however, can be devastating. In many places, people still suffer from diseases such as elephantiasis, river blindness, and hookworm, caused by nematodes. In most places, the effect on humans is indirect. For example, in the United States, plant-parasitic nematodes cause more than $3 billion worth of crop losses each year, and cause similar losses in cattle, sheep, and swine." (See more information about nematodes on its website.)
- Author: Kathy Keatley Garvey
The Shahid Siddique laboratory was out in force on Saturday, Feb. 18 during the 12th annual UC Davis Biodiversity Museum Day.
The nematologists set up their display in the Katherine Esau Science Hall, formerly the Sciences Lab Building, and drew nearly 1000 visitors, the most ever.
“BioDiv Day went really well,” said Siddique, an assistant professor of nematology, UC Davis Department of Entomology and Nematology. “A lot of people took interest in getting information about dog heartworms and root-knot nematodes infecting tomatoes. Some people said that nematodes were their favorite stop for BioDiv Day. We had 906 visitors in total and a vast majority of them were kids with family.”
Participating with Siddique were his graduate students Alison Coomer, Veronica Casey, Pallavi Shakya, and Ching-Jung Lin, and professor emeritus Valerie Williamson of Plant Pathology.
The Siddique lab focuses on basic as well as applied aspects of interaction between parasitic nematodes and their host plants. "The long-term object of our research is not only to enhance our understanding of molecular aspects of plant–nematode interaction," Siddique says, "but also to use this knowledge to provide new resources for reducing the impact of nematodes on crop plants in California."
- Celery infected with root-knot nematodes
- Anisakis nematodes from a Minke whale stomach
- Heart of a dog infected with heartworms (Dirofilaria immitis)
- Parasitic nematodes (Baylisascaris transfuga) isolated from the stomach of a bear
- White-tailed deer eye infected with parasitic nematodes (Thelazia spp.)
- Sugar beet infected with root-knot nematodes
- Dog ascaris (Toxocara canis) cause of visceral larva migrans
- Common parasitic worms of human (Ascaris lumbricoides) cause of Ascaris isolated from human intestine
- Dog intestine infected with whipworms
- Horse stomach parasite community including 1) Parascaris 2) Tapeworms 3) Botfly larvae
- Yam infected with root-knot nematode
- Tomato root infected with root-knot nematode
- Adult raccoon roundworms
- Filarial nematodes (Onchocerca volvulus) cause of Onchocerciasis river blindness
- Zoonotic hookworms (Ancylostoma caninum)
- Ascaris lumbricoides (common parasitic worms of human)
- Tree swallow infected with Diplotriaena nematode
- Sugar beet infected with cyst nematode (Heterodera schachtii)
- Grape roots infected with Root-knot nematodes
- Mormon crickets infected with horsehair worms (Gordius robustus)
- Peach roots infected with root-knot nematodes
- Anisakis nematodes from fish intestine
- Hysterotahylaciun nematodes isolated from fish
- Pinworms isolated from human intestine
- Whipworms isolated from human Intestine
- Anisakis nematodes isolated from seals
- Adult dog heartworms
BioDiv Day, founded by the Bohart Museum, is traditionally held on Presidents' Day weekend. Some 3000 attended this year's event, estimated chair Tabatha Yang, education and outreach coordinator of the Bohart Museum. The "Super Science Day" is free and family friendly. Yang is encouraging donations to help pay expenses; access the UC Davis crowdfunding page.
The Esau Science Hall is newly named for UC Davis professor emeritus Katherine Esau, 1898-1997. Internationally known as one of the most influential plant biologists and professors in history, Esau is lauded for her pioneering work on plant anatomy and structure that laid the foundation for much of today's research in the field. She won the National Medal of Science awarded by then president George Bush.
Esau was born in Ukraine. Her family fled to Berlin after World War I and then emigrated to the United States. She joined the UC Davis faculty after receiving her doctorate in 1931. She was elected to the National Academy of Sciences in 1957, only the sixth woman to receive that honor. Following her retirement, she relocated to UC Santa Barbara in 1965. According to Wikipedia, she continued research well into her 90s, publishing a total of 162 articles and five books.
Esau died June 4, 1997 at age 99 in Santa Barbara. A New York Times article quoted Peter Raven, director of the Missouri Botanical Garden: "She absolutely dominated the field of plant anatomy and morphology for several decades. She set the stage for all kinds of modern advances in plant physiology and molecular biology."
In 1982, at age 84, Esau delivered her final UC Davis lecture, covering plasmodesmata. In 1988, she donated $648,000 to UC Davis to establish an endowment to fund plant research fellowships in perpetuity. As of 2020, the endowment's market value has increased by almost six times its original amount, standing at $3.7 million, according to a UC Davis news story.
- Author: Kathy Keatley Garvey
The open-access journal Nature Communications, published the peer-reviewed research Oct. 19.
“Plant-parasitic nematodes are a threat to crop production,” said Siddique, an assistant professor in the UC Davis Department of Entomology and Nematology. “We used a combination of genomic, genetic, and biochemical approaches to show that the plant pathogen cyst nematode possesses an incomplete vitamin B5 synthesis pathway, of potential prokaryotic origin, which is complemented by its plant host. This approach has identified new targets for future development of nematode-resistant crops.”
The 33-member research team included scientists from universities in Germany, France, The Netherlands, Poland, and the United Kingdom, as well as scientists from three universities in the United States: Iowa State University, Ames; and the University of Tennessee, Knoxville; and UC Davis.
The article is titled “The Genome and Lifestage-Specific Transcriptomes of a Plant-Parasitic Nematode and its Host Reveal Susceptibility Genes Involved in Trans-Kingdom Synthesis of Vitamin B5.”
“The scarcity of classical resistance genes highlights a pressing need to find new ways to develop nematode-resistant germplasm,” the scientists wrote in their abstract. “Here, we sequence and assemble a high-quality phased genome of the model cyst nematode Heterodera schachtii to provide a platform for the first system-wide dual analysis of host and parasite gene expression over time, covering all major parasitism stages. Analysis of the hologenome of the plant nematode infection site identified metabolic pathways that were incomplete in the parasite but complemented by the host. Using a combination of bioinformatic, genetic, and biochemical approaches, we show that a highly atypical completion of vitamin B5 biosynthesis by the parasitic animal, putatively enabled by a horizontal gene transfer from a bacterium, is required for full pathogenicity. Knockout of either plant encoded or now nematode-encoded steps in the pathway significantly reduces parasitic success. Our experiments establish a reference for cyst nematodes, further our understanding of the evolution of plant parasitism by nematodes, and show that congruent differential expression of metabolic pathways in the infection hologenome represents a new way to find nematode susceptibility genes. The approach identifies genome-editing-amenable targets for future development of nematode-resistant crops.”
Corresponding authors are Florian Grundler of the Rheinische Friedrich-Wilhelms-University of Bonn, Germany, and Sebastian Eves-van den Akker of the Crop Science Centre, Department of Plant Sciences, University of Cambridge, UK.
Research in the Siddique lab focuses on basic as well as applied aspects of interaction between parasitic nematodes and their host plants. “Plant-parasitic nematodes are destructive pests causing losses of billions of dollars annually,” Siddique said. “The long-term object of our research is not only to enhance our understanding of molecular aspects of plant–nematode interaction but also to use this knowledge to provide new resources for reducing the impact of nematodes on crop plants in California.”
- Author: Kathy Keatley Garvey
He will present his in-person seminar at 4:10 p.m. in 122 Briggs Hall. It also will be virtual; the Zoom link is https://ucdavis.zoom.us/j/99515291076.
"Twenty years ago while attempting to develop a new concept for studying insect aging in the wild, I discovered a previously unknown mathematical identity now referred to in the formal demography literature as the eponym Carey's Equality—the age distribution of a stationary population equals the distribution of lifetimes yet to come," Professor Carey says in his abstract. "In this seminar I will present my attempts at both operationalizing the concept for study of populations of insects and other non-human species, and generalizing it for applications to groups with fixed numbers of members and where renewal involves birth and death processes."
"These general applications include data from a British cemetery, the National Basketball Association, the Baltimore Longitudinal Health Study, the U.S. Congress (both chambers) and the world population," said Carey, a member of the UC Davs Department of Entomology and Nematology faculty since 1980. "After discussing implications and extensions of the identity, I will wrap up with descriptions of five simple but important demographic relations that all entomologists should know."
Highly honored for his research, teaching and public service, Carey served as the principal investigator of a 10-year, $10 million federal grant on “Aging in the Wild,” encompassing 14 scientists at 11 universities.
Biodemography Textbook. In 2020, he and Deborah Roach, professor and chair of the University of Virginia's Department of Biology, co-authored a 480-page textbook, Biodemography: An Introduction to Concepts and Methods, published by Princeton University Press and hailed as the “definitive textbook for the emerging field of biodemography, integrating biology, mathematics and demography.” Carey recently created a free-access, video guidebook with a playlist of 175 separate presentations, subtitled in 300 different languages. He storyboarded the script, turned graphs, schematics, tables and equations into animated slides, and then with teleprompter assistance, narrated and video-recorded the 175 presentations, which span 12 hours of viewing. It appears on UC Berkeley Population Sciences website at https://bit.ly/3FTge7u.
An internationally recognized teacher, Carey won a 2018 global award in the Robert Foster Cherry Award for Great Teaching Program, an academic competition sponsored every two years by Baylor University, Waco, Texas. He received the 2015 Distinguished Achievement in Teaching Award from the Entomological Society of America (ESA) and the 2014 Distinguished Teaching Award from the Pacific Branch of ESA. The UC Davis Academic Senate honored him as the recipient of its 2014 Distinguished Teaching Award, given to internationally recognized professors who excel at teaching.
Carey is a fellow of four organizations: American Association for the Advancement of Science, Entomological Society of America, California Academy of Science and the Gerontological Society of America. He holds a doctorate in entomology (1980) from UC Berkeley, and two degrees from Iowa State University: a bachelor of science degree in animal biology (1973) and a master's degree in entomology (1975).
Nematologist Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology, coordinates the spring seminars. He may be reached at ssiddique@ucdavis.edu for any technical issues regarding Zoom.
- Author: Kathy Keatley Garvey
Her seminar begins at 4:10 p.m. The Zoom link: https://ucdavis.zoom.us/j/99515291076
"My lab studies the ecology and evolution of host-symbiont interactions," Wood says. "We're especially interested in the causes and consequences of conflicts that arise as hosts navigate interactions with multiple partners. I will talk about three recent projects in my lab that explore how antagonists affect host-symbiont interactions in the model mutualism between legumes and nitrogen-fixing bacteria."
As an evolutionary biologist, Wood is interested in the evolutionary ecology and evolutionary genetics of species interactions. Her research interests include ecology and biodiversity, plant biology, evolution and genetics, epigenetics and genomics.
Wood holds a bachelor of arts degree in English literature (2008) from Swarthmore (Penn.) College. She received her doctorate in biology from the University of Virginia in 2015. Her dissertation: "The Consequences of Environmental Heterogeneity for Fitness, Selection, and Inheritance."
Wood served as a postdoctoral fellow at the University of Toronto from 2015 to 2018 before accepting a faculty position at the University of Pittsburgh. She joined the University of Pennsylvania faculty in July 2020. (See profile)
Nematologist Shahid Siddique, who coordinates the UC Davis Department of Entomology and Nematology seminars, will introduce Wood. For any technical issues involving the Zoom presentation, he may be reached at ssidique@ucdavis.edu.
The remaining spring seminars:
Wednesday, May 25 (virtual and in-person at 122 Briggs Hall)
James R. Carey, UC Davis distinguished professor
UC Davis Department of Entomology and Nematology
Title: "The Conceptual Sweep of a Mathematical Discovery in Insect Demography: From Estimation of Medfly Population Age Structure to an Historical Analysis of U.S. Congress Incumbency Distributions, 1785-2000”
Host: Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology
Wednesday, June 1 (virtual and in-person at 122 Briggs Hall)
Isgouhi Kaloshian, Divisional Dean, Agricultural and Natural Resources
UC Riverside
Title: "Root-Knot Nematode Perception and Immune Signaling in Arabidopsis"
Host: Shahid Siddique, assistant professor, UC Davis Department of Entomology and Nematology
